View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14591_high_4 (Length: 276)
Name: NF14591_high_4
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 51767289 - 51767529
Alignment:
| Q |
18 |
aaattgtgtttggcagaagctagaaatggatcagaaattaaaatctggcctgaggccagctattgactttgtgcattgacgactgacctatgtagcacgg |
117 |
Q |
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| T |
51767289 |
aaattgtgtttggcagaagctagaaatggatcagaaattaaaatctggcctgaggccagctattgactttgtgcattgacgactgacctatgtagcacgg |
51767388 |
T |
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| Q |
118 |
acactttagattgaaggcatgtttagagttggatacatattgttgttcgacacaagcatgacaccgatatatgtggttctattcgatcatttttattttg |
217 |
Q |
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| T |
51767389 |
acactttagattgaaggcatgtttagagttggatacatattgttgttcgacacaagcatgacaccgatatatgtggttctattcgatcatttttattttg |
51767488 |
T |
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| Q |
218 |
ttaaattattaggtattgtatctggtgtttgtgtaaggtct |
258 |
Q |
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| T |
51767489 |
ttaaattattaggtattgtatctggtgtttgtgtaaggtct |
51767529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 51755543 - 51755759
Alignment:
| Q |
18 |
aaattgtgtttggcagaagctagaaatggatcagaaattaaaatc-------tggcctgaggccagctattgactttgtgcattgacgactgacctatgt |
110 |
Q |
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| T |
51755543 |
aaattgtgtttggcagaaactagaaatgggtcagaaactaaaatctggcagttggcctaaggctggctattgacattgtgtgttgacggctgacctatgt |
51755642 |
T |
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| Q |
111 |
agcacggacactttagattgaaggcatgtttagagttggatacatattgttgttcgacacaagcatgacaccg------atatatgtggttctattcgat |
204 |
Q |
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| T |
51755643 |
agcaccgatacattaaattgaagccgtgcccagaatcggatacatactgttgttgaacacaagcaagacaccgaccgatatatatgtggttctattcaat |
51755742 |
T |
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| Q |
205 |
catttttattttgttaa |
221 |
Q |
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| T |
51755743 |
catttttattttcttaa |
51755759 |
T |
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