View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14591_high_6 (Length: 215)
Name: NF14591_high_6
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 29101028 - 29100831
Alignment:
| Q |
1 |
cggaaactatatgtgcatgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaac |
100 |
Q |
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| T |
29101028 |
cggaaactatatgtgcatgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacggaac |
29100929 |
T |
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| Q |
101 |
gagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
198 |
Q |
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| T |
29100928 |
cagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29100831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 29063092 - 29062895
Alignment:
| Q |
1 |
cggaaactatatgtgcatgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaac |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
29063092 |
cggaaactatatgtgcatgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaac |
29062993 |
T |
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| Q |
101 |
gagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
198 |
Q |
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| T |
29062992 |
cagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29062895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 29117946 - 29117749
Alignment:
| Q |
1 |
cggaaactatatgtgcatgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaac |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
29117946 |
cggaaactatatgtgcatgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaac |
29117847 |
T |
|
| Q |
101 |
gagagtataagatccagaatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
198 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29117846 |
cagagtatacgatccagaatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29117749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29120667 - 29120620
Alignment:
| Q |
1 |
cggaaactatatgtgcatgaatgctatgcatgcgagctcaagaaataa |
48 |
Q |
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| T |
29120667 |
cggaaactatatgtgcatgaatattatgcatgcgagctcatgaaataa |
29120620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
| Q |
126 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
184 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4259860 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4259802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
| Q |
126 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
184 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4263482 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4263424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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