View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14591_low_1 (Length: 629)
Name: NF14591_low_1
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 13 - 613
Target Start/End: Original strand, 36230284 - 36230891
Alignment:
| Q |
13 |
tgaaaagaaactgaataattcactattacttaagaaattctgctcctccattctcataaattgattctgaaacacattctcttgagaacctcttgaatca |
112 |
Q |
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| T |
36230284 |
tgaaaagaaactgaataattcactattacttaagaaattctgctcctccattctcataaattgattctgaaacacattctcttgagaacctcttgaatca |
36230383 |
T |
|
| Q |
113 |
taataatgaaccaaatttatcattgaacttggcaaagaaccattgaaacacataggagaatcaacattactttcttccttaattataccacttgaattac |
212 |
Q |
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| T |
36230384 |
taataatgaaccaaatttatcattgaacttggcaaagaaccattgaaacacataggagaatcaacattactttcttccttaattataccacttgaattac |
36230483 |
T |
|
| Q |
213 |
tttctgaacctcctctttctatacctcttgaaattggacattctacttctttctctaactcattgctttcaactcttaacaatttcgctttcaactctct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36230484 |
tttctgaacctcctctttctatacctcttgaaattggacattctacttctttctctaactcattgctttcaactcgtaacaatttcgctttcaactctct |
36230583 |
T |
|
| Q |
313 |
taactgcagttcacacacata---------aaagattacacataacatcattcacataaacnnnnnnnnnntatatcatgaataatacatgtatatatta |
403 |
Q |
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| T |
36230584 |
taactgcagttcacacacataaaaagacacaaagattacacataacatcattcacataaacaaaaaaaaa--atatcatgaataatacatgtatatatta |
36230681 |
T |
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| Q |
404 |
cctttctagtaagagtctcattctcttgttgaagattagtatactcaaccttaagaacatcaaaattggacttaagaacactataatctctttccaattg |
503 |
Q |
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| T |
36230682 |
cctttctagttagagtctcattctcttgttgaagattagtatactcaaccttaagaacatcaaaattggacttaagaacactataatctctttccaattg |
36230781 |
T |
|
| Q |
504 |
tttggttttcgttcgtgctcgacgattttggaaccaaattgaaacttgtctaggttgcaagcctaaatcttcagctaacttcacttttctctctggctct |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36230782 |
tttggttttcgttcgtgctcgacgattttggaaccaaattgaaacttgtctaggttgcaagcctaaatcttcagctaacttcacttttctctctggctct |
36230881 |
T |
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| Q |
604 |
agcttgttgt |
613 |
Q |
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|||||||||| |
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| T |
36230882 |
agcttgttgt |
36230891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 563
Target Start/End: Complemental strand, 37519910 - 37519808
Alignment:
| Q |
461 |
catcaaaattggacttaagaacactataatctctttccaattgtttggttttcgttcgtgctcgacgattttggaaccaaattgaaacttgtctaggttg |
560 |
Q |
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||||| |||||| || ||||||| |||||||||||||||||||||||| ||| || || ||||| ||||| ||||||| | ||||||||| ||||| |
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| T |
37519910 |
catcataattggctttgagaacaccataatctctttccaattgtttggtcttccatctagcacgacggttttgaaaccaaacagcaacttgtcttggttg |
37519811 |
T |
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| Q |
561 |
caa |
563 |
Q |
| |
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||| |
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| T |
37519810 |
caa |
37519808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 484
Target Start/End: Complemental strand, 23262553 - 23262507
Alignment:
| Q |
438 |
attagtatactcaaccttaagaacatcaaaattggacttaagaacac |
484 |
Q |
| |
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|||| ||||||||| |||||||||||| ||||||||||| ||||||| |
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| T |
23262553 |
attattatactcaaacttaagaacatcgaaattggactttagaacac |
23262507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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