View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14591_low_3 (Length: 387)
Name: NF14591_low_3
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 183 - 383
Target Start/End: Complemental strand, 32942550 - 32942357
Alignment:
| Q |
183 |
taaaatggtgttatgataaaagtatgtatagttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
282 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32942550 |
taaaatggtgttatgataaaagtat----agttggaaaacagcacacagtttttagactcctaacaccaaatacccccatccctcaaaataggttcaaac |
32942455 |
T |
|
| Q |
283 |
tcagtagcactattcatgagcacatatgttacactgcggtggaataaaaaactacaatttattgtaggttgtctcccaacaaacacgacttattattttt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32942454 |
tcagtagcactattcatgagcacatatgttacactgcggtggaagaaaaaactacaatttattgtaggttgtctcc---caaacacgacttattattttt |
32942358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 32942819 - 32942642
Alignment:
| Q |
4 |
taatactgttaaaggacttaaagcacttttatctgttgctgcttataaaaaactttggttcccggatcgtttacacaaagactttcttgaggtatgtatg |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32942819 |
taattctgttaaaggacttaaagcacttttatctgttgctgcttataaaaaactttggttcccggatcgtttacacaaagactttcttgaggtatgtatg |
32942720 |
T |
|
| Q |
104 |
taaccctagttttcttcagtaaaatcttttgattaaacaaatgaaatttgagaaaatatagctagctgttgtattgtagtaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32942719 |
taaccctagttttcttcagtaaaatcttttgattaaacaaatgaaatttgagaaaatat----agctgttgtattgtagtaa |
32942642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University