View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14591_low_4 (Length: 283)
Name: NF14591_low_4
Description: NF14591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14591_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 46603828 - 46603558
Alignment:
| Q |
13 |
aggcagtataattaaactatgcagaagtagtagcagttgactattttattggatgaacagaacaaagcagtcagcacacgcgggaagatgtattacaatt |
112 |
Q |
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| T |
46603828 |
aggcagtataattaaactatgcagaagtagtagcagttgactattttattggatgaacagaacaaagcagtcagcacacgcgggaagatgtattacaatt |
46603729 |
T |
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| Q |
113 |
caaccagcaaataggttggaagggggcatactggacccattcattaatactaaaatatatggttccataatcccttctcacataaactaaatgtgcatca |
212 |
Q |
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| T |
46603728 |
caaccggcaaataggttggaagggggcatactggacccattcattaatactaaaatatatggttccataatcccttctcacataaactaaatgtgcatca |
46603629 |
T |
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| Q |
213 |
aacagagaatatatcatggtccaactctataccccactttgcaactgctcctccatcacgtataaatcata |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46603628 |
aacagagaatatatcatggtccaactctataccccactttgcaactgctcctctatcacgtataaatcata |
46603558 |
T |
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