View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14592_high_14 (Length: 237)

Name: NF14592_high_14
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14592_high_14
NF14592_high_14
[»] chr7 (12 HSPs)
chr7 (65-214)||(31577230-31577380)
chr7 (104-214)||(859243-859354)
chr7 (104-214)||(1217247-1217358)
chr7 (52-158)||(22572423-22572530)
chr7 (104-222)||(13882773-13882891)
chr7 (57-214)||(4668205-4668363)
chr7 (143-222)||(1220560-1220639)
chr7 (58-158)||(32052989-32053089)
chr7 (59-222)||(4303332-4303498)
chr7 (59-217)||(5678254-5678412)
chr7 (59-217)||(5703306-5703464)
chr7 (105-222)||(13886276-13886393)
[»] chr3 (16 HSPs)
chr3 (60-221)||(41218688-41218850)
chr3 (104-222)||(43306759-43306878)
chr3 (104-222)||(3068962-3069081)
chr3 (104-222)||(43304047-43304164)
chr3 (107-222)||(53012909-53013025)
chr3 (57-201)||(4580469-4580612)
chr3 (104-222)||(3063824-3063943)
chr3 (54-217)||(19949891-19950055)
chr3 (48-175)||(20398430-20398558)
chr3 (129-221)||(25857675-25857768)
chr3 (57-163)||(40593483-40593589)
chr3 (52-217)||(39913263-39913430)
chr3 (57-168)||(33620048-33620158)
chr3 (104-163)||(5128851-5128911)
chr3 (59-158)||(25340124-25340224)
chr3 (51-129)||(33528046-33528125)
[»] chr4 (11 HSPs)
chr4 (47-222)||(22716542-22716718)
chr4 (47-222)||(22988499-22988675)
chr4 (61-190)||(9596857-9596987)
chr4 (105-222)||(22691194-22691312)
chr4 (57-173)||(2053047-2053164)
chr4 (57-165)||(19684773-19684882)
chr4 (45-203)||(13085119-13085278)
chr4 (104-222)||(6659417-6659536)
chr4 (95-190)||(4053062-4053157)
chr4 (156-222)||(24667570-24667637)
chr4 (47-189)||(34949022-34949162)
[»] chr1 (8 HSPs)
chr1 (105-222)||(13444076-13444194)
chr1 (104-222)||(13441686-13441805)
chr1 (52-160)||(42071356-42071465)
chr1 (48-174)||(40804591-40804717)
chr1 (61-190)||(12033594-12033724)
chr1 (47-100)||(49044181-49044235)
chr1 (104-222)||(50857531-50857651)
chr1 (56-163)||(12486265-12486372)
[»] chr8 (16 HSPs)
chr8 (104-222)||(23573466-23573585)
chr8 (52-211)||(18180717-18180877)
chr8 (104-222)||(23570470-23570586)
chr8 (104-222)||(22512133-22512254)
chr8 (104-222)||(42891751-42891871)
chr8 (129-214)||(26150581-26150666)
chr8 (104-222)||(22926735-22926853)
chr8 (104-222)||(6845220-6845338)
chr8 (59-149)||(10456238-10456329)
chr8 (104-163)||(22520886-22520946)
chr8 (47-132)||(12310835-12310921)
chr8 (141-186)||(18468598-18468644)
chr8 (104-218)||(22921937-22922053)
chr8 (48-112)||(29019155-29019218)
chr8 (104-190)||(37189783-37189868)
chr8 (52-88)||(18468697-18468733)
[»] chr5 (4 HSPs)
chr5 (57-217)||(19677170-19677331)
chr5 (104-222)||(40778873-40778993)
chr5 (60-130)||(7775392-7775463)
chr5 (47-91)||(22668464-22668508)
[»] chr6 (10 HSPs)
chr6 (52-168)||(2339086-2339200)
chr6 (52-162)||(2939727-2939837)
chr6 (59-217)||(3565626-3565782)
chr6 (56-163)||(11190441-11190548)
chr6 (104-222)||(3535918-3536036)
chr6 (104-222)||(3542129-3542247)
chr6 (108-222)||(29340897-29341013)
chr6 (59-162)||(13645851-13645955)
chr6 (60-130)||(8568633-8568704)
chr6 (52-163)||(26571092-26571204)
[»] chr2 (12 HSPs)
chr2 (141-222)||(2165806-2165887)
chr2 (105-222)||(2155850-2155968)
chr2 (104-188)||(22011353-22011438)
chr2 (61-203)||(8781416-8781558)
chr2 (54-183)||(44675258-44675389)
chr2 (104-222)||(27956241-27956361)
chr2 (104-222)||(27952405-27952525)
chr2 (105-222)||(31633987-31634105)
chr2 (52-190)||(18725628-18725767)
chr2 (73-203)||(22264338-22264468)
chr2 (104-222)||(31636220-31636339)
chr2 (135-222)||(15129301-15129391)
[»] scaffold0110 (1 HSPs)
scaffold0110 (104-222)||(45349-45469)
[»] scaffold0251 (1 HSPs)
scaffold0251 (60-158)||(8198-8297)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 31577230 - 31577380
Alignment:
Q  65 aagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagagaaaa 163  Q
    ||||||||||||||| ||||||||||| ||||||||| | |||||||| |||||| |||||||| |||| ||||| ||||||||||||||||||||||||    
T  31577230 aagggttagcaagcgctaaacctaaaagataaacagataggttgcaagcgacaaacctatcaaataagggtttccgaaatccaccagaattgagagaaaa 31577329  T
Q  164 gtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagtt 214  Q
    ||||  |||||| ||| ||||| |||| || | ||||||||| ||||||||    
T  31577330 gtcttgaatatttttattgaatgaaaaagttcctcttaggttgcataagtt 31577380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 859243 - 859354
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| || | |||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  859243 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtgcattttag 859342  T
Q  203 gttacataagtt 214  Q
    | ||||||||||    
T  859343 gctacataagtt 859354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 1217247 - 1217358
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| || | |||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  1217247 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtgcattttag 1217346  T
Q  203 gttacataagtt 214  Q
    | ||||||||||    
T  1217347 gctacataagtt 1217358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 22572423 - 22572530
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    |||| |||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| |||||| |||||||| |||| |||||  ||||||| ||    
T  22572423 gcagaacggaagcaaggattagcaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatcaaataagggtttccggaatccacaag 22572522  T
Q  151 aattgaga 158  Q
    ||||||||    
T  22572523 aattgaga 22572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 13882773 - 13882891
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||||||||||||||||| ||||||||| | ||| ||||| |||| |||  ||||||    
T  13882773 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtctcttag 13882871  T
Q  203 gttacataagttctgcttat 222  Q
    | ||||||||||||||||||    
T  13882872 gatacataagttctgcttat 13882891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 4668205 - 4668363
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    |||||||||||| |||||||  ||||||||||||| ||||||||| | | || ||| |||||| |||| ||| |||| |||||| |||||||| |||||     
T  4668205 acggaagcaaggtttagcaaatgttaaacctaaaagataaacagaaaggatgtaagcgacaaacctattaaataagggtttccataatccacctgaatta 4668304  T
Q  156 agagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagtt 214  Q
    ||||||||||||| |||||| ||  | ||| |||| |||| ||||||| | ||||||||    
T  4668305 agagaaaagtctcgaatattttttttcaatgaaaaagtgcctcttaggctgcataagtt 4668363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 1220560 - 1220639
Alignment:
Q  143 tccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||  |||| ||||||| ||||||||||||| ||||    
T  1220560 tccaccagaattgagagaaaagtctctaatattgttaatgaatagaagcgtgcctcttaggctacataagttctgtttat 1220639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 32053089 - 32052989
Alignment:
Q  58 cggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattga 156  Q
    |||||| |||| |||||||||| ||||||||||| |||||||||||  ||||||| |||||| || ||||||| || ||||| |||||||||||||||||    
T  32053089 cggaagtaaggattagcaagcgctaaacctaaaagataaacagacaatttgcaagcgacaaatctgtcaaaaaggg-tttccgaaatccaccagaattga 32052991  T
Q  157 ga 158  Q
    ||    
T  32052990 ga 32052989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 4303498 - 4303332
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtg-acaaagctatcaaaaaaggatttccaaaatccaccagaattga 156  Q
    ||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| | ||||| |||| ||| |||| ||| |  ||||||| ||||||||    
T  4303498 ggaagcaagggttagtaagcgctaaacctaaaagataaagagacaggttgcaagcgaacaaacctattaaataagggttttcggaatccactagaattga 4303399  T
Q  157 gagaaaagtctcaaatattattaatgaat--aaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    ||||||| |||| |||| | ||| |||||  |||| ||||| ||||||| ||||||||| ||| ||||    
T  4303398 gagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataagtcctgtttat 4303332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 5678254 - 5678412
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgag 157  Q
    |||||||||||||||||||   ||||| ||||| ||||||||||| ||| |||| |||||| |||||||| ||||  |||  | || |||||||||||||    
T  5678254 ggaagcaagggttagcaagtactaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataagg-gttcacatatacaccagaattgag 5678352  T
Q  158 agaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctg 217  Q
    ||||||||||| |||| | ||| ||||| |||| |||  ||||| | | |||||||||||    
T  5678353 agaaaagtctcgaataattttattgaatgaaaaagtgtctcttaagctgcataagttctg 5678412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 5703306 - 5703464
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgag 157  Q
    |||||||||||||||||||   ||||| ||||| ||||||||||| ||| |||| |||||| |||||||| ||||  |||  | || |||||||||||||    
T  5703306 ggaagcaagggttagcaagtactaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataagg-gttcacatatacaccagaattgag 5703404  T
Q  158 agaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctg 217  Q
    ||||||||||| |||| | ||| ||||| |||| |||  ||||| | | |||||||||||    
T  5703405 agaaaagtctcgaataattttattgaatgaaaaagtgtctcttaagctgcataagttctg 5703464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13886276 - 13886393
Alignment:
Q  105 ttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttagg 203  Q
    ||||||| |||||| ||||||||| |||| |||||| ||||||||| ||||||||||||| |||| |||  | ||| ||||| |||| |||  |||||||    
T  13886276 ttgcaagcgacaaacctatcaaaataagggtttccagaatccaccataattgagagaaaa-tctcgaatgattttattgaatcaaaaagtgtctcttagg 13886374  T
Q  204 ttacataagttctgcttat 222  Q
     ||||||||||| ||||||    
T  13886375 atacataagttcagcttat 13886393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 41218850 - 41218688
Alignment:
Q  60 gaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgaga 158  Q
    |||||||||||||| ||||| |||| |||||| ||||| ||| | |||| ||| |||||| |||||||| |||| |||||  ||||||||||||||||||    
T  41218850 gaagcaagggttagtaagcgctaaatctaaaagataaatagataggttgtaagcgacaaacctatcaaataaggctttccggaatccaccagaattgaga 41218751  T
Q  159 gaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctgctta 221  Q
    |||||||||| |||||||||| ||||||||| ||||  ||||||| | |||||||||||||||    
T  41218750 gaaaagtctcgaatattattattgaataaaagtgtgtctcttaggctccataagttctgctta 41218688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 43306759 - 43306878
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| |||||  |||||||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||||    
T  43306759 gttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctcttag 43306858  T
Q  203 gttacataagttctgcttat 222  Q
    | ||||||||||||||||||    
T  43306859 gctacataagttctgcttat 43306878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 3068962 - 3069081
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  3068962 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaattgagagaaaagtatcgaatattattaatgaataaaagtgtgcatcttag 3069061  T
Q  203 gttacataagttctgcttat 222  Q
    | |||||||||| |||||||    
T  3069062 gctacataagttatgcttat 3069081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 43304047 - 43304164
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| |||| |||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||  ||||||    
T  43304047 gttgcaagcgacaaacctattaaaataagggtttccgaaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaa--gtgtctcttag 43304144  T
Q  203 gttacataagttctgcttat 222  Q
    | ||||||||||||||||||    
T  43304145 gctacataagttctgcttat 43304164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 53013025 - 53012909
Alignment:
Q  107 gcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggtt 205  Q
    ||||| |||||| ||||||||| |||| |||||  |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctcttaggct 53012926  T
Q  206 acataagttctgcttat 222  Q
    |||| |||| |||||||    
T  53012925 acattagttatgcttat 53012909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 4580612 - 4580469
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    |||||| |||||||||||||||| ||||||||||| ||||||| ||| |||||||| |||||| |||||||| |||| ||| || ||||||| |||||||    
T  4580612 acggaaacaagggttagcaagcgctaaacctaaaagataaacacacaggttgcaagcgacaaacctatcaaataagggttttcagaatccactagaattg 4580513  T
Q  156 agagaaaagtctcaaatattattaatgaataaaaatgtgcatctta 201  Q
    |||||||| |||| |||||| ||| ||||| |||| ||||||||||    
T  4580512 agagaaaattctcgaatatt-ttattgaatgaaaa-gtgcatctta 4580469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 3063824 - 3063943
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| ||| |  |||| ||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||    
T  3063824 gttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtacctcttag 3063923  T
Q  203 gttacataagttctgcttat 222  Q
    | |||||||||| |||||||    
T  3063924 gctacataagttatgcttat 3063943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 19950055 - 19949891
Alignment:
Q  54 agtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa 152  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||| | |||||||| ||||||  ||||||| |||| |||    |||||| |||||    
T  19950055 agtacggaaacaagggttagcaagcgctaaacctaaaagataaacagataagttgcaagcgacaaacttatcaaataagggtttttggaatccatcagaa 19949956  T
Q  153 ttgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctg 217  Q
    |||||||||||||||| |||||| ||| | ||| | || |||  ||||||| | |||||||||||    
T  19949955 ttgagagaaaagtctctaatatttttattcaatgataaagtgactcttaggctgcataagttctg 19949891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 20398430 - 20398558
Alignment:
Q  48 tgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatcca 146  Q
    |||||||| |||||||||||  |||||||||| ||||||||||| |||| |||||| |||||||| |||||  |||||||| |||| ||| |  ||||||    
T  20398430 tgatgcagaacggaagcaagaattagcaagcgctaaacctaaaagataatcagacaggttgcaagcgacaagtctatcaaataagggttttcggaatcca 20398529  T
Q  147 ccagaattgagagaaaagtctcaaatatt 175  Q
    |||||||||||| ||||||||| ||||||    
T  20398530 ccagaattgagaaaaaagtctcgaatatt 20398558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 25857768 - 25857675
Alignment:
Q  129 aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa-tgtgcatcttaggttacataagttctgctta 221  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||  ||||||| |||||||||| ||||||    
T  25857768 aagggtttccgaaatccaccacaattgagagaaaagtctcaaatattattattgaataaaaagtgtgtctcttaggctacataagttatgctta 25857675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 40593483 - 40593589
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattga 156  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||||||  |||||||| |||||| |||||||| |||| ||| |  ||||||||| ||||||    
T  40593483 acggaagcaagggttagtaagcgctaaaccaaaaaaaaaacagacgggttgcaagcgacaaacctatcaaataagggttttcggaatccaccaaaattga 40593582  T
Q  157 gagaaaa 163  Q
    |||||||    
T  40593583 gagaaaa 40593589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 39913263 - 39913430
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    |||| ||||||||||| ||||| ||||  ||||  ||||| ||||||| | || ||| |||||||||| |||||||| |  |   |||  ||||||||||    
T  39913263 gcagaacggaagcaagagttaggaagcactaaatttaaaagataaacacatatattgtaagtgacaaacctatcaaatagaggggtccggaatccaccag 39913362  T
Q  151 aattgagagaaaagtctcaaatattattaatgaat-aaaaatgtgcatcttaggttacataagttctg 217  Q
    ||||| |||||||||||| |||||| ||| ||||| |||||||||| ||||||| | |||||||||||    
T  39913363 aattgggagaaaagtctcgaatatttttattgaatcaaaaatgtgcctcttaggctgcataagttctg 39913430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 33620048 - 33620158
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattga 156  Q
    |||||||||||| ||||||| |  ||||||||||| ||||||||||   |||||| |  ||| |||||||| |||| |||||| ||||| ||||||||||    
T  33620048 acggaagcaaggattagcaaactctaaacctaaaa-taaacagacaatctgcaagcgcaaaacctatcaaataagggtttccagaatcctccagaattga 33620146  T
Q  157 gagaaaagtctc 168  Q
    ||||||| ||||    
T  33620147 gagaaaaatctc 33620158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 5128911 - 5128851
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaa 163  Q
    |||||||| |||||| ||||||||| |||| |||||  |||||||||||||||||||||||    
T  5128911 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa 5128851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 158
Target Start/End: Original strand, 25340124 - 25340224
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgag 157  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||| |||||| |  ||||| |||||||| |||| ||||   |||||| || |||||||    
T  25340124 ggaagcaaggattaacaaacgttaaacctaaaagataaacagacaggttgcacgcaacaaacctatcaaataagggtttctggaatccatcataattgag 25340223  T
Q  158 a 158  Q
    |    
T  25340224 a 25340224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 33528046 - 33528125
Alignment:
Q  51 tgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaa 129  Q
    ||||| |||||||||||| |||||||||||||||| ||||| ||||| ||| | |||| ||| |||||| || |||||||    
T  33528046 tgcagaacggaagcaaggattagcaagcgttaaacttaaaagataaatagataagttgtaagcgacaaacctgtcaaaaa 33528125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 22716718 - 22716542
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaa-ggatttccaaaatc 144  Q
    ||||| |||| |||||| ||| |||| |||  | ||||||||||| |||||| |||| |||||||| |||||| ||||||||||| || |||||  ||||    
T  22716718 gtgattcagtgcggaagtaagagttaccaaaagctaaacctaaaatataaactgacaggttgcaagcgacaaacctatcaaaaaaagggtttccggaatc 22716619  T
Q  145 caccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||||||||||| ||||    
T  22716618 caccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctctta-gctacataagttctggttat 22716542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 22988499 - 22988675
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatc-aaaaaaggatttccaaaatc 144  Q
    ||||| ||||||||||| ||| |||| |||  | |||| |||||| |||||| |||| |||||||| |||||| ||||| |||||||| |||||  ||||    
T  22988499 gtgattcagtacggaagtaagagttaccaaaagctaaatctaaaagataaactgacaggttgcaagcgacaaacctatcgaaaaaagggtttccggaatc 22988598  T
Q  145 caccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||||||||||| ||||    
T  22988599 caccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctctta-gctacataagttctggttat 22988675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 9596987 - 9596857
Alignment:
Q  61 aagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagag 159  Q
    |||||| |||||||||||| ||||||||||| ||||| ||||| |||||||  || ||| |||||||| |||| |||||| |||||||||||||||||||    
T  9596987 aagcaaaggttagcaagcgctaaacctaaaagataaaaagacaggttgcaaacgataaacctatcaaataagggtttccataatccaccagaattgagag 9596888  T
Q  160 aaaagtctcaaatattattaatgaataaaaa 190  Q
    |||||||||||||||| ||| ||||| ||||    
T  9596887 aaaagtctcaaatattcttattgaatgaaaa 9596857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 22691312 - 22691194
Alignment:
Q  105 ttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttagg 203  Q
    ||||||| |||||| ||||| ||| |||| |||||  |||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||    
T  22691312 ttgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctcttagg 22691213  T
Q  204 ttacataagttctgcttat 222  Q
     ||||||||||||||||||    
T  22691212 ctacataagttctgcttat 22691194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 2053047 - 2053164
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaa-aataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    ||||||| ||||||||||||| |||||||||||  |||||||||||| |||||||| |||||| |||||||| |||| ||||| |||||||| |||||||    
T  2053047 acggaagtaagggttagcaagtgttaaacctaacgaataaacagacaagttgcaagcgacaaatctatcaaataagggtttccgaaatccactagaattg 2053146  T
Q  156 agagaaaagtctcaaata 173  Q
    ||  ||||||||| ||||    
T  2053147 aggaaaaagtctcgaata 2053164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 19684773 - 19684882
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||  ||||||| |||||| |||||||| |||| |||||| ||| ||  |||||||    
T  19684773 acggaaacaagggttagcaagcgctaaacctaaaagataaacagacagtttgcaagcgacaaacctatcaaacaagggtttccagaattcaatagaattg 19684872  T
Q  156 agagaaaagt 165  Q
    ||||||||||    
T  19684873 agagaaaagt 19684882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 13085119 - 13085278
Alignment:
Q  45 aagtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaa-aaggatttccaaaa 142  Q
    |||||| |||| ||||||||||| ||| ||||||| ||||||||||| |||||| |||| |||||||| |||||| ||||||||| |||| ||| |  ||    
T  13085119 aagtgacgcagcacggaagcaagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaa 13085218  T
Q  143 tccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttagg 203  Q
    ||||||| ||||||||||||| |||| |||| | ||| |||||||||| |||  |||||||    
T  13085219 tccaccaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttagg 13085278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 6659417 - 6659536
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaat-aaaaatgtgcatctta 201  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||||||||||||||||| |||| |||| | ||| ||||| |||||  ||| |||||    
T  6659417 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaatagttttagtgaatcaaaaagttgcctctta 6659515  T
Q  202 ggttacataagttctgcttat 222  Q
    || ||||||||||||||||||    
T  6659516 ggctacataagttctgcttat 6659536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 4053157 - 4053062
Alignment:
Q  95 aacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa 190  Q
    |||| |||||| ||||| |||||| |||||||  |||||||| | |||||||||| |||||||||||||||||| |||||| ||| ||||| ||||    
T  4053157 aacaaacatgtagcaagcgacaaacctatcaagtaaggattttcgaaatccaccataattgagagaaaagtctcgaatatttttattgaatgaaaa 4053062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 24667637 - 24667570
Alignment:
Q  156 agagaaaagtctcaaatattattaatgaa-taaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||    
T  24667637 agagaaaagtctcgaatattattaatgaaataaaagtgtgcctcttaggctacataagttctgcttat 24667570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 34949022 - 34949162
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatcca 146  Q
    ||||||||| ||| ||| || |||||||||||| ||||  |||||||||||||||||  || ||| || ||| |||| |||  ||| ||||  |||||||    
T  34949022 gtgatgcagaacgaaagtaaaggttagcaagcgctaaatttaaaaataaacagacat--tgtaagcgataaacctattaaattagggtttctgaaatcca 34949119  T
Q  147 ccagaattgagagaaaagtctcaaatattattaatgaataaaa 189  Q
    || || |||||||||||||||| |||||| ||| |||||||||    
T  34949120 cccgatttgagagaaaagtctcgaatatttttattgaataaaa 34949162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13444076 - 13444194
Alignment:
Q  105 ttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttagg 203  Q
    ||||||| ||||||  |||||||| |||| |||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  13444076 ttgcaagcgacaaacatatcaaaataagggtttccgtaatccaccagaattgagagaaaagtctctaatattattactgaataaaaatgtgcctcttagg 13444175  T
Q  204 ttacataagttctgcttat 222  Q
     ||||||||||||||||||    
T  13444176 ctacataagttctgcttat 13444194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 13441686 - 13441805
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| || ||| |||| |||| ||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  13441686 gttgcaagcgaaaaacctattaaaataaggatttccggaatccatcagaattgagagaaaagtctctaatattattaatgaataaaagtgtgcctcttag 13441785  T
Q  203 gttacataagttctgcttat 222  Q
    | || |||||||| ||||||    
T  13441786 gctatataagttcagcttat 13441805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 42071356 - 42071465
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    |||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||  ||||   |||||| ||     
T  42071356 gcagaacggaagcaagggttaacaagcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaataagcgtttctggaatccatcat 42071455  T
Q  151 aattgagaga 160  Q
    ||||||||||    
T  42071456 aattgagaga 42071465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 40804717 - 40804591
Alignment:
Q  48 tgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatcca 146  Q
    |||| ||| ||||||||||| ||||||||||| ||| | ||||| |||| || | |  ||||||| |||||| |||||||| | || |||||||||||||    
T  40804717 tgatccagaacggaagcaagagttagcaagcgctaa-cataaaagataagcaaaaagattgcaagcgacaaacctatcaaatacgggtttccaaaatcca 40804619  T
Q  147 ccagaattgagagaaaagtctcaaatat 174  Q
    |||||||||||||||||||||| |||||    
T  40804618 ccagaattgagagaaaagtctcgaatat 40804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 12033594 - 12033724
Alignment:
Q  61 aagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagag 159  Q
    ||||| |||||||||| ||| |||  ||||| ||||||| ||| |||||||| ||||||  |||||||  ||| ||| || ||||||  |||||||||||    
T  12033594 aagcaggggttagcaaacgtcaaaattaaaagataaacaaacaagttgcaagcgacaaacttatcaaatgagggtttacataatccattagaattgagag 12033693  T
Q  160 aaaagtctcaaatattattaatgaataaaaa 190  Q
    ||||||||| |||||| ||| | ||||||||    
T  12033694 aaaagtctcgaatatttttattaaataaaaa 12033724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 49044235 - 49044181
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacaga 100  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||    
T  49044235 gtgatgcaggacggaagcaagggttagcaagcgctaaacctaaaagataaacaga 49044181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 50857531 - 50857651
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaat--aaaaatgtgcatctt 200  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||||||||||||||||| |||| |||| | ||| || ||  |||| ||||| ||||    
T  50857531 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgtatcaaaaagtgtgcctctt 50857629  T
Q  201 aggttacataagttctgcttat 222  Q
    ||| | ||||||||||||||||    
T  50857630 aggctgcataagttctgcttat 50857651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 12486265 - 12486372
Alignment:
Q  56 tacggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    |||||||||||| ||||||||||  |||||||| ||  ||||||| || |||||||  ||||| |||| ||| |||| ||| |  ||||||||| |||||    
T  12486265 tacggaagcaagagttagcaagcactaaacctacaataaaacagatatattgcaagcaacaaacctattaaataagggttttcggaatccaccaaaattg 12486364  T
Q  156 agagaaaa 163  Q
    ||||||||    
T  12486365 agagaaaa 12486372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 23573585 - 23573466
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| ||||| |||||||||  |||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  23573585 gttgcaagcgacaaacctatcaaaataagggtttccgaaatccacctaaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctcttag 23573486  T
Q  203 gttacataagttctgcttat 222  Q
    | ||||||||||| ||||||    
T  23573485 gctacataagttccgcttat 23573466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 18180717 - 18180877
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccacca 149  Q
    |||||||||||||   || ||||||||| ||||||||||  |||||| ||||||||||||| |||||| ||||||||| |||| |||||| |||||||||    
T  18180717 gcagtacggaagcgtaggctagcaagcgctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccacca 18180816  T
Q  150 gaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataa 211  Q
    |||||||||||||| |||| |||| | ||| ||||| |||| |||| ||||||| |||||||    
T  18180817 gaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgcctcttaggctacataa 18180877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 23570586 - 23570470
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  23570586 gttgcaagcgacaaacctatcaaaataagggtttccagaatgcaccagaattgagagaaaagtctcgaatattatttatgaataaaagtgtgcctcttag 23570487  T
Q  203 gttacataagttctgcttat 222  Q
    |   ||||||||| ||||||    
T  23570486 g---cataagttccgcttat 23570470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 22512133 - 22512254
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa---tgtgcatct 199  Q
    ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||| |||| |||| | ||| ||||||||||   ||||  |||    
T  22512133 gttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaa-tctcgaataattttattgaataaaaaaagtgtgactct 22512231  T
Q  200 taggttacataagttctgcttat 222  Q
    |||||||||||||| ||||||||    
T  22512232 taggttacataagtgctgcttat 22512254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 42891751 - 42891871
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa--tgtgcatctt 200  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||||||||||||||||| ||||||||| | ||| ||||| ||||  ||||| ||||    
T  42891751 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtgcctctt 42891849  T
Q  201 aggttacataagttctgcttat 222  Q
    ||| ||||||||||||||||||    
T  42891850 aggctacataagttctgcttat 42891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 26150666 - 26150581
Alignment:
Q  129 aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagtt 214  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||| |||| |||| ||||| | | ||||||||    
T  26150666 aaggatttccagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtgcctcttaagctgcataagtt 26150581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 22926735 - 22926853
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| |||| ||||   ||||||||||||||||||||||| |||| |||||| ||| ||||| ||| ||||  ||||||    
T  22926735 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaatatttttattgaattaaattgtgtctcttag 22926833  T
Q  203 gttacataagttctgcttat 222  Q
    | | ||||||||||||||||    
T  22926834 gctgcataagttctgcttat 22926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 6845338 - 6845220
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatgtgcatctta 201  Q
    |||||||| |||||| ||||||||| |||| ||||  || ||||||| || ||||||||||| |||| |||||||||||||||| |||| |||  |||||    
T  6845338 gttgcaagcgacaaacctatcaaaataagggtttcggaa-tccaccaaaaattgagagaaaa-tctcgaatattattaatgaatcaaaaagtgtctctta 6845241  T
Q  202 ggttacataagttctgcttat 222  Q
    || ||||||||||||||||||    
T  6845240 ggatacataagttctgcttat 6845220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 10456238 - 10456329
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccacca 149  Q
    |||||||||| |||||||||  |||| |||||| ||||| ||| | |||||||| |||||| || |||||||||| ||||||||||||||||    
T  10456238 ggaagcaaggattagcaagctctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaaaagggtttccaaaatccacca 10456329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 22520886 - 22520946
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaa 163  Q
    ||||||||||||||| ||||||||| |||| |||||  |||||||||||||||||||||||    
T  22520886 gttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa 22520946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 12310921 - 12310835
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaagg 132  Q
    ||||||||| |  ||| |||||||||||||||| ||||||||||| ||||||||||| ||||  || |||||| |||| ||||||||    
T  12310921 gtgatgcagaatcgaatcaagggttagcaagcgctaaacctaaaagataaacagacaagttgtgagcgacaaacctataaaaaaagg 12310835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 18468644 - 18468598
Alignment:
Q  141 aatccaccagaa-ttgagagaaaagtctcaaatattattaatgaata 186  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  18468644 aatccaccagaaattgagagaaaagtctcgaatattattaatgaata 18468598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 22921937 - 22922053
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa--tgtgcatctt 200  Q
    |||||||| |||||| ||||||||| |||| |||||  ||||||||||||||||||||||| |||| |||| | ||| ||||| ||||  ||||  ||||    
T  22921937 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaggtgtgtctctt 22922035  T
Q  201 aggttacataagttctgc 218  Q
    ||| | ||||||||||||    
T  22922036 aggctgcataagttctgc 22922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 29019155 - 29019218
Alignment:
Q  48 tgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagt 112  Q
    |||||||| |||||| |||||||||| ||||||||||||||||| ||||||  |||||||||||||    
T  29019155 tgatgcagaacggaaacaagggttaggaagcgttaaacctaaaagataaac--acatgttgcaagt 29019218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 37189868 - 37189783
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa 190  Q
    |||||||| |||||| ||||||||| | |  |||| ||||||||||||| |  ||||||| |||| |||||||||||||||||||||    
T  37189868 gttgcaagcgacaaacctatcaaaataagggttccgaaatccaccagaaatt-gagaaaaatctcgaatattattaatgaataaaaa 37189783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 18468733 - 18468697
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaaccta 88  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  18468733 gcagtacagaagcaagggttagcaagcgctaaaccta 18468697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 19677170 - 19677331
Alignment:
Q  57 acggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattg 155  Q
    |||||||||||| |||||||||| ||| ||||||| ||||||||| | |||||||| |||||| || ||||| |||| ||| |  |||||||||||||||    
T  19677170 acggaagcaaggattagcaagcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttcaaataagggttttcggaatccaccagaattg 19677269  T
Q  156 agagaaaagtctcaaatattattaatgaata-aaaatgtgcatcttaggttacataagttctg 217  Q
    ||||||||||||| |||||| ||| |||||| ||| ||||| ||||||| | |||||||||||    
T  19677270 agagaaaagtctcgaatatt-ttattgaatacaaagtgtgcctcttaggatgcataagttctg 19677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 40778873 - 40778993
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaat--aaaaatgtgcatctt 200  Q
    |||||||| |||||| ||||||||| |||| ||||   ||||||||||||||||||||||| |||| |||| | ||| |||||  |||| ||||| ||||    
T  40778873 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 40778971  T
Q  201 aggttacataagttctgcttat 222  Q
    ||  ||||||||||||||||||    
T  40778972 agactacataagttctgcttat 40778993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7775463 - 7775392
Alignment:
Q  60 gaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaa 130  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||  ||||| || ||||||||    
T  7775463 gaagcaaggattagcaaacgttaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaa 7775392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 22668464 - 22668508
Alignment:
Q  47 gtgatgcagtacggaagcaagggttagcaagcgttaaacctaaaa 91  Q
    |||| ||||||| |||||||||||||||||||| |||||||||||    
T  22668464 gtgacgcagtacagaagcaagggttagcaagcgctaaacctaaaa 22668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 2339086 - 2339200
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccaga 151  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||||||| | ||||||  ||||| |||||||| |||| ||||| ||||||||||||    
T  2339086 gcaggacggaagtaagggttagcaagcgctaaacctaaaa-taaacagacaggctgcaagc-acaaatctatcaaataagggtttccgaaatccaccaga 2339183  T
Q  152 attgagagaaaagtctc 168  Q
    |||||||||||||||||    
T  2339184 attgagagaaaagtctc 2339200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 2939727 - 2939837
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaa-aaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    ||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||| |||||| |||||||| |||| ||| | ||||||||||     
T  2939727 gcagtacggaagcaagggttagcaagcgacaaacctatcaaataaacagacatgttgcaagcgacaaacctatcaaataagg-ttttcgaaatccaccat 2939825  T
Q  151 aattgagagaaa 162  Q
    ||||||||||||    
T  2939826 aattgagagaaa 2939837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 3565782 - 3565626
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaaataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgaga 158  Q
    |||||||||||||||||| || ||||| |||||   |||| ||| |||| ||| || ||| |||||||| |||  |||||||||||||||||||||||||    
T  3565782 ggaagcaagggttagcaaacgctaaacttaaaagataaca-acaggttgtaagcgataaacctatcaaataagagtttccaaaatccaccagaattgaga 3565684  T
Q  159 gaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctg 217  Q
    |||||||||| |||||| ||| ||||| |||| |||| |||| || |||||||||||||    
T  3565683 gaaaagtctcgaatatttttattgaatgaaaa-gtgcctctttggctacataagttctg 3565626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 11190548 - 11190441
Alignment:
Q  56 tacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaatt 154  Q
    ||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||| |||||| |||||||| |||| |||||  ||||||||||||||    
T  11190548 tacggaagcaagggttagcaaacactaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaataagg-tttccggaatccaccagaatt 11190450  T
Q  155 gagagaaaa 163  Q
    |||||||||    
T  11190449 gagagaaaa 11190441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 3536036 - 3535918
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| | |  ||||  |||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| ||||||    
T  3536036 gttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctcttag 3535938  T
Q  203 gttacataagttctgcttat 222  Q
    | | ||||||||||||||||    
T  3535937 gctgcataagttctgcttat 3535918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 3542247 - 3542129
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttag 202  Q
    |||||||| |||||| ||||||||| | |  ||||  |||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| ||||||    
T  3542247 gttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctcttag 3542149  T
Q  203 gttacataagttctgcttat 222  Q
    | | ||||||||||||||||    
T  3542148 gctgcataagttctgcttat 3542129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 29340897 - 29341013
Alignment:
Q  108 caagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa-tgtgcatcttaggtt 205  Q
    |||| |||||| ||||||||| || | |||||  ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||   ||||||| |    
T  29340897 caagcgacaaacctatcaaaataaaggtttccggaatccactagaattgagagaaaagtctcgaatattattaatgaataaaaagtgtttgtcttaggct 29340996  T
Q  206 acataagttctgcttat 222  Q
     ||||||||||||||||    
T  29340997 gcataagttctgcttat 29341013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 13645851 - 13645955
Alignment:
Q  59 ggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgag 157  Q
    ||||||||||||||||||||| | | ||||||| |||||||||||  |||||||  ||||| |||| ||| |||| |||||  |||| | ||||||||||    
T  13645851 ggaagcaagggttagcaagcgcttagcctaaaagataaacagacagattgcaagcaacaaacctattaaataagggtttccggaatctaacagaattgag 13645950  T
Q  158 agaaa 162  Q
    |||||    
T  13645951 agaaa 13645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 8568633 - 8568704
Alignment:
Q  60 gaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaa 130  Q
    ||||||||| ||||||| || ||||||||||| ||||||||||| ||||||||  ||||| || ||||||||    
T  8568633 gaagcaaggattagcaaacgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaa 8568704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 26571204 - 26571092
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    |||| |||||||  |||| ||||||||| ||||| ||||| ||||| ||||| |||||||| |||||| |||| ||| | || ||| |  ||||| | ||    
T  26571204 gcagaacggaagatagggatagcaagcgctaaacttaaaagataaatagacaggttgcaagcgacaaatctattaaataggggttttcggaatccgctag 26571105  T
Q  151 aattgagagaaaa 163  Q
    |||||||||||||    
T  26571104 aattgagagaaaa 26571092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 2165887 - 2165806
Alignment:
Q  141 aatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||  ||||||| | |||||||||| |||||    
T  2165887 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttaggctgcataagttctccttat 2165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 2155968 - 2155850
Alignment:
Q  105 ttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaatgtgcatcttagg 203  Q
    ||||||| |||||| ||||||||| |||| ||| |  |||||| ||||||||||||||||||||  |||||||||| ||||||||| ||||  |||||||    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaattgagagaaaagtcttgaatattattattgaataaaagtgtgtctcttagg 2155869  T
Q  204 ttacataagttctgcttat 222  Q
     | ||||||||||||||||    
T  2155868 ctgcataagttctgcttat 2155850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 22011438 - 22011353
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaa 188  Q
    |||| ||| |||||| ||||||||| |||| |||||  |||||||||||||||||||||||||||| |||||||||||||||||||    
T  22011438 gttggaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaa 22011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 8781558 - 8781416
Alignment:
Q  61 aagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagag 159  Q
    ||||||||||||  ||||| ||||||||||| ||||||||||| |||||||| |||||| |||||||| |||| ||| | ||||||||||||||||||||    
T  8781558 aagcaagggttaaaaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaacctatcaaataagggttt-cgaaatccaccagaattgagag 8781460  T
Q  160 aaaagtctcaaatattattaatgaat-aaaaatgtgcatcttagg 203  Q
     ||| |||| |||| | ||| ||||| ||||| |||| |||||||    
T  8781459 taaa-tctcgaataattttattgaatgaaaaaagtgcctcttagg 8781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 44675258 - 44675389
Alignment:
Q  54 agtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa 152  Q
    |||| |||||||||||||||||| ||  |||| ||||| ||||||||||| |||||||| |||| | |||||||| |||| ||| |  ||||||||||||    
T  44675258 agtatggaagcaagggttagcaaacgccaaacataaaagataaacagacaggttgcaagcgacatacctatcaaataagggttttcggaatccaccagaa 44675357  T
Q  153 ttgagag-aaaagtctcaaatattattaatga 183  Q
    ||||||| |||||| || |||| |||||||||    
T  44675358 ttgagagaaaaagtttcgaatactattaatga 44675389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 27956241 - 27956361
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa--tgtgcatctt 200  Q
    |||||||| |||||| |||| |||| |||| |||||  ||||||||||||||||||||||| |||| |||| | ||| ||||| ||||  ||||| ||||    
T  27956241 gttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 27956339  T
Q  201 aggttacataagttctgcttat 222  Q
    ||| ||||||||||||||||||    
T  27956340 aggctacataagttctgcttat 27956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 27952405 - 27952525
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaaa--tgtgcatctt 200  Q
    |||||||| |||||| || | |||| |||| |||||  ||||||||||||||||||||||| |||| |||| | ||| ||||| ||||  ||||| ||||    
T  27952405 gttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 27952503  T
Q  201 aggttacataagttctgcttat 222  Q
    ||| ||||||||||||||||||    
T  27952504 aggctacataagttctgcttat 27952525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 31634105 - 31633987
Alignment:
Q  105 ttgcaagtgacaaagctatcaaaa-aaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatg-tgcatctta 201  Q
    ||||||| |||||| ||||||||| |||| ||||  || |||||||||| ||||||||||| |||||||||||||||||||||||||| | ||| ||||     
T  31634105 ttgcaagcgacaaacctatcaaaataagggtttcggaa-tccaccagaaattgagagaaaa-tctcaaatattattaatgaataaaaaagttgcctcttc 31634008  T
Q  202 ggttacataagttctgcttat 222  Q
    || | |||||||||| |||||    
T  31634007 ggctgcataagttctacttat 31633987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 18725628 - 18725767
Alignment:
Q  52 gcagtacggaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccag 150  Q
    |||| |||||||||||||||| ||| || ||||| ||||| ||||||||||| | |||||| |||||| |||||||| || | ||||   | ||||| |     
T  18725628 gcagaacggaagcaagggttaacaaacgctaaacttaaaagataaacagacaggctgcaagcgacaaacctatcaaataaaggtttctggattccactaa 18725727  T
Q  151 aattgagagaaaagtctcaaatattattaatgaataaaaa 190  Q
    |||| |||||||||| ||||||| | ||| ||||| ||||    
T  18725728 aattaagagaaaagtttcaaataattttattgaatgaaaa 18725767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 22264468 - 22264338
Alignment:
Q  73 gcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgagagaaaagtctcaaa 171  Q
    ||||||||||||||||| | ||||| ||||| |||||||| |||||| ||||| || || | |||| | |||||| ||||||||||| |||| |||| ||    
T  22264468 gcaagcgttaaacctaatagataaagagacaggttgcaagagacaaacctatcgaataaaggtttctagaatccatcagaattgagataaaa-tctcgaa 22264370  T
Q  172 tattattaatgaataaaaatgtgcatcttagg 203  Q
    || | ||| ||||| |||| |||| |||||||    
T  22264369 taattttattgaatcaaaaagtgcctcttagg 22264338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 31636339 - 31636220
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatg-tgcatctta 201  Q
    |||||||| |||||| ||||||||| | |  ||||  |||||||||||| ||||||||||| |||  ||||||||||||||||||||| | ||  ||||     
T  31636339 gttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaa-tcttgaatattattaatgaataaaaaagttgtctcttc 31636241  T
Q  202 ggttacataagttctgcttat 222  Q
    || |||||||||||| |||||    
T  31636240 ggctacataagttctacttat 31636220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 15129391 - 15129301
Alignment:
Q  135 ttccaaaatccaccagaattgagagaaaagtctc--aaatattattaatgaa-taaaaatgtgcatcttaggttacataagttctgcttat 222  Q
    ||||| |||| |||||||   |||||||||||||  |||||||||  ||||| ||||| ||||| ||||||| ||||||||||||||||||    
T  15129391 ttccagaatcaaccagaaaatagagaaaagtctctgaaatattatagatgaaataaaagtgtgcctcttaggctacataagttctgcttat 15129301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 45349 - 45469
Alignment:
Q  104 gttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaa-ttgagagaaaagtctcaaatattattaatgaataaaaatg--tgcatctt 200  Q
    |||||||| |||||| ||||||||| | |  ||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||  ||| ||||    
T  45349 gttgcaagcgacaaacctatcaaaataagggttccagaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaaatgtttgcctctt 45447  T
Q  201 aggttacataagttctgcttat 222  Q
    ||| | |||||||||| |||||    
T  45448 aggctgcataagttctccttat 45469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 8198 - 8297
Alignment:
Q  60 gaagcaagggttagcaagcgttaaacctaaaa-ataaacagacatgttgcaagtgacaaagctatcaaaaaaggatttccaaaatccaccagaattgaga 158  Q
    ||||||||| ||| |||||  |||||||| || ||||||||||| |||||||| |||||| || ||||| |||| ||||   |||||| |||||||||||    
T  8198 gaagcaaggattatcaagctctaaacctagaagataaacagacaagttgcaagcgacaaacctgtcaaataagggtttctggaatccatcagaattgaga 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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