View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14592_high_3 (Length: 493)

Name: NF14592_high_3
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14592_high_3
NF14592_high_3
[»] chr6 (5 HSPs)
chr6 (158-480)||(31774276-31774591)
chr6 (18-106)||(31774135-31774223)
chr6 (345-400)||(26559165-26559220)
chr6 (342-395)||(2455896-2455949)
chr6 (355-395)||(3738200-3738240)
[»] chr8 (9 HSPs)
chr8 (355-410)||(44236739-44236794)
chr8 (356-410)||(7008698-7008752)
chr8 (349-395)||(1889066-1889112)
chr8 (344-394)||(5226603-5226653)
chr8 (342-392)||(24326117-24326167)
chr8 (342-412)||(30191055-30191125)
chr8 (342-395)||(1664455-1664508)
chr8 (342-395)||(1892155-1892208)
chr8 (356-389)||(6496776-6496809)
[»] chr5 (1 HSPs)
chr5 (355-409)||(25720334-25720388)
[»] chr4 (8 HSPs)
chr4 (338-395)||(7367985-7368042)
chr4 (349-394)||(51560221-51560266)
chr4 (342-393)||(8328052-8328103)
chr4 (349-395)||(29126194-29126240)
chr4 (355-397)||(46187838-46187880)
chr4 (350-395)||(3549486-3549531)
chr4 (342-395)||(3639099-3639152)
chr4 (350-395)||(50746069-50746114)
[»] chr3 (2 HSPs)
chr3 (342-415)||(30657372-30657445)
chr3 (355-395)||(25699129-25699169)
[»] chr2 (5 HSPs)
chr2 (338-395)||(14277824-14277881)
chr2 (342-395)||(35809953-35810006)
chr2 (350-395)||(28803461-28803506)
chr2 (342-395)||(36236374-36236427)
chr2 (343-395)||(42852633-42852685)
[»] chr7 (5 HSPs)
chr7 (350-390)||(28165185-28165225)
chr7 (358-395)||(1418521-1418558)
chr7 (342-395)||(24048626-24048679)
chr7 (357-394)||(24363532-24363569)
chr7 (342-394)||(21247586-21247638)
[»] chr1 (3 HSPs)
chr1 (342-394)||(25719757-25719809)
chr1 (342-411)||(32515356-32515425)
chr1 (342-395)||(46504149-46504202)
[»] scaffold0091 (1 HSPs)
scaffold0091 (344-394)||(6020-6070)
[»] scaffold0199 (1 HSPs)
scaffold0199 (342-395)||(6896-6949)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 158 - 480
Target Start/End: Original strand, 31774276 - 31774591
Alignment:
Q  158 gttgcttgagtggttgtttgtgcatcttataggataagtgtttattatataagctattatgaataagctacaagataaaataaagttaaaatctttcgag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31774276 gttgcttgagtggttgtttgtgcatcttataggataagtgtttattatataagctattatgaataagctacaagataaaataaagtttaaatctttcgag 31774375  T
Q  258 ataaggtataggttgtttcattagtatcttgaagggttttgaaaataagttgagaatgaacatatcataag---nnnnnnnnncatgagctcttccaaag 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||     
T  31774376 ataaggtataggttgtttcattagtatcttgaagggttttgaaaataagttgagaatgaacatatcataagttttttttttttcatgagctcttccaaac 31774475  T
Q  355 agtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggcccctaatatagtattagagtatatccattcaaggccacaaacca 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  31774476 agtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggcccctaatatag----------tatccattcaaggccacaaacca 31774565  T
Q  455 tttatatctacgcaccaagcctgata 480  Q
    ||||||||||||||||||||||||||    
T  31774566 tttatatctacgcaccaagcctgata 31774591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31774135 - 31774223
Alignment:
Q  18 aggttctcagtggaatactgttgggtttgttggagaatggttgtggattcttggtgttctttttgcggtataattcaacttctatcttg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31774135 aggttctcagtggaatactgttgggtttgttggagaatggttgtggattcttggtgttctttttgcggtataattcaacttctatcttg 31774223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 26559220 - 26559165
Alignment:
Q  345 tcttccaaagagtctcataagtgcttatgccggtagataaactcaaataagataat 400  Q
    ||||||||| ||||||| || |||||||||| |||| |||||||||||||| ||||    
T  26559220 tcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaat 26559165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 2455896 - 2455949
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||| ||| | ||||  |||||||||||||||||||||| ||||||||||    
T  2455896 agctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaataag 2455949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 3738200 - 3738240
Alignment:
Q  355 agtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  3738200 agtctcacaagtgcttatgctagtagataaactcaaataag 3738240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 44236794 - 44236739
Alignment:
Q  355 agtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggc 410  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||| || ||||||    
T  44236794 agtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacaggc 44236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 7008698 - 7008752
Alignment:
Q  356 gtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggc 410  Q
    |||||| ||||||||||||| |||||||||||||||||||  |||||| ||||||    
T  7008698 gtctcacaagtgcttatgccagtagataaactcaaataagtcaattcaaacaggc 7008752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 1889112 - 1889066
Alignment:
Q  349 ccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||    
T  1889112 ccaaacagtctcaaaagtgtttatgccagtagataaactcaaataag 1889066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 5226603 - 5226653
Alignment:
Q  344 ctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataa 394  Q
    |||||||||| ||||||||||||||||||||  ||||||||  ||||||||    
T  5226603 ctcttccaaacagtctcataagtgcttatgcaagtagataagatcaaataa 5226653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 24326117 - 24326167
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaat 392  Q
    |||||| ||||| ||||||| ||||||||||||| |||||||| |||||||    
T  24326117 agctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 30191125 - 30191055
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggccc 412  Q
    |||||| ||||| ||||| | |||||||||||||  |||||||||||||||||| | || || ||||||||    
T  30191125 agctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataagcttatgcaaacaggccc 30191055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 1664455 - 1664508
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||| ||||| ||||||| ||||| ||||||  |||||||||||||||||||    
T  1664455 agctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 1664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 1892208 - 1892155
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||| ||||| | ||||| ||||| ||||| |||||||||||||||||||||    
T  1892208 agctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaataag 1892155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 6496809 - 6496776
Alignment:
Q  356 gtctcataagtgcttatgccggtagataaactca 389  Q
    |||||||||||||||||||| |||||||||||||    
T  6496809 gtctcataagtgcttatgccagtagataaactca 6496776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 25720388 - 25720334
Alignment:
Q  355 agtctcataagtgcttatgccggtagataaactcaaataagataattcatacagg 409  Q
    ||||||| ||||||||||||| |||||||| |||||||||| ||||||| |||||    
T  25720388 agtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaacagg 25720334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 7368042 - 7367985
Alignment:
Q  338 catgagctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||||| ||||| ||||||| ||| | ||||||| |||||||||||||||||||    
T  7368042 catgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataag 7367985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 51560266 - 51560221
Alignment:
Q  349 ccaaagagtctcataagtgcttatgccggtagataaactcaaataa 394  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||    
T  51560266 ccaaagagtctcataagtgcttatgccagtagataagctcatataa 51560221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 8328103 - 8328052
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaata 393  Q
    |||| ||||||| |||||||||||||||||||||  ||||||| ||||||||    
T  8328103 agctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 29126240 - 29126194
Alignment:
Q  349 ccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||| ||| || ||||||||||||||||||||||| ||||||||||    
T  29126240 ccaaatagtttcgtaagtgcttatgccggtagataagctcaaataag 29126194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 46187880 - 46187838
Alignment:
Q  355 agtctcataagtgcttatgccggtagataaactcaaataagat 397  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  46187880 agtctcataagtgtttatgccagtagataagctcaaataagat 46187838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 3549531 - 3549486
Alignment:
Q  350 caaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||| |||||||||||||||||||||  |||||||||| |||||||    
T  3549531 caaacagtctcataagtgcttatgccaatagataaactaaaataag 3549486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 3639152 - 3639099
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||||||| | ||||| | ||||||||| |||||||||| ||||||||||    
T  3639152 agctcttccaaataatctcacaggtgcttatgtcggtagataagctcaaataag 3639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 50746069 - 50746114
Alignment:
Q  350 caaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||| ||||||| ||||||||||||  |||||||||||||||||||    
T  50746069 caaatagtctcacaagtgcttatgcaagtagataaactcaaataag 50746114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 30657372 - 30657445
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggccccta 415  Q
    |||||||||||| | ||||| ||||||||||| | ||||||||||||||||||   |||||| |||| ||||||    
T  30657372 agctcttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataaatcaattcaaacagaccccta 30657445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 25699169 - 25699129
Alignment:
Q  355 agtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||||||||||||||||| |  ||||||||||||||||||    
T  25699169 agtctcataagtgcttatgtcaatagataaactcaaataag 25699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 14277881 - 14277824
Alignment:
Q  338 catgagctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||||||||||| | ||||| |||| |||||| | |||||||||||||||||||    
T  14277881 catgagctcttccaaacactctcacaagtacttatgtccgtagataaactcaaataag 14277824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 35809953 - 35810006
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||| ||||| ||||||| || ||||||||||||||||||| ||||||||||    
T  35809953 agctctcccaaatagtctcacaactgcttatgccggtagataagctcaaataag 35810006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 28803506 - 28803461
Alignment:
Q  350 caaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||| ||||||| | |||||||||||||||||||| ||||||||||    
T  28803506 caaacagtctcacatgtgcttatgccggtagataagctcaaataag 28803461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 36236427 - 36236374
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||||| |||| |||||| ||||||||||||| | ||||| ||||||||||||    
T  36236427 agctcttacaaatagtctcgtaagtgcttatgctgatagatgaactcaaataag 36236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 42852685 - 42852633
Alignment:
Q  343 gctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    ||||||||||| ||||||| ||||||||||||| | ||||||  |||||||||    
T  42852685 gctcttccaaacagtctcacaagtgcttatgccagcagataagttcaaataag 42852633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 28165185 - 28165225
Alignment:
Q  350 caaagagtctcataagtgcttatgccggtagataaactcaa 390  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  28165185 caaagagtctcataagtgcttatgctggtagataagctcaa 28165225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 1418521 - 1418558
Alignment:
Q  358 ctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  1418521 ctcataagtgcttatgccagtagataagctcaaataag 1418558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 24048626 - 24048679
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||||||||| |||||  ||||| |||||| | |||||||||||||||||||    
T  24048626 agctcttccaaacagtcttttaagtacttatgtcagtagataaactcaaataag 24048679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 24363569 - 24363532
Alignment:
Q  357 tctcataagtgcttatgccggtagataaactcaaataa 394  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  24363569 tctcataagtgcttatgctagtagataaactcaaataa 24363532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 21247586 - 21247638
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataa 394  Q
    ||||||| |||| ||| ||| ||||| |||||| |||||||||||||||||||    
T  21247586 agctcttgcaaacagtttcacaagtggttatgcaggtagataaactcaaataa 21247638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 25719757 - 25719809
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataa 394  Q
    |||||| |||||||||||||||| |||||| ||| ||| ||||||||||||||    
T  25719757 agctctcccaaagagtctcataaatgcttaagccagtaaataaactcaaataa 25719809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 32515425 - 32515356
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataagataattcatacaggcc 411  Q
    |||||| ||||| ||||||| |||||||||||   ||||||||||||||||| | |||| || |||||||    
T  32515425 agctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaacaggcc 32515356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 46504202 - 46504149
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||| || || ||||||| || | ||||||||||||||||||||||||||||    
T  46504202 agctctaccgaacagtctcacaaatacttatgccggtagataaactcaaataag 46504149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 6020 - 6070
Alignment:
Q  344 ctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataa 394  Q
    |||||||||| ||||||||||||||||||||  ||||||||  ||||||||    
T  6020 ctcttccaaacagtctcataagtgcttatgcaagtagataagatcaaataa 6070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 6896 - 6949
Alignment:
Q  342 agctcttccaaagagtctcataagtgcttatgccggtagataaactcaaataag 395  Q
    |||||| ||||| ||||||| ||||| ||||||  |||||||||||||||||||    
T  6896 agctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University