View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_high_4 (Length: 470)
Name: NF14592_high_4
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Complemental strand, 8743333 - 8742922
Alignment:
| Q |
6 |
tgagatgaaaaagaggatgcgctacactctaataaaagaaagatatttttagtaattttctctatattggatgggccgtggtccacctgagccctagagg |
105 |
Q |
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| T |
8743333 |
tgagatgaaaaagaggatgcgctacactctaataaaagaaagatatttttagtaattttctctatattgaatgggctgtggtccatctg----------- |
8743245 |
T |
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| Q |
106 |
ggctccgccgctggcctttcatggaccaccagagctaaatgaactagagccttcatggaccgcagtcggatgtcactttgagccttcatggaatagtgct |
205 |
Q |
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| T |
8743244 |
-------ccgctggccttttatggaccaccagagctaaatggactagagccttcatggaccgtatttggatgtcactttgagccttcatggaccagtgct |
8743152 |
T |
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| Q |
206 |
tttcaatatttttatattagaattagaaattagaatataattaaaccatttaactaaatggatcaattattttttgacagttatcaaatggatcaatcgg |
305 |
Q |
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| T |
8743151 |
tttcaatatttttatattagaattagaaattagaatataattaaaccatttaactaaatggatcaattattttttgacagttatcaaatggatcaatcgg |
8743052 |
T |
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| Q |
306 |
atctaattcattagttattttttaggtaatgatagttatagcgaattagttatcgtgactgctttcaattttatacagtgaataaattagatgaatgcta |
405 |
Q |
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| T |
8743051 |
atctaattcattagttattttttaggtaatgatagttatagcgaattagttatcgtgactgctttcaattttatacagtgaataaattagatgaatgcta |
8742952 |
T |
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| Q |
406 |
cagtgaatgaattgtattggaaagatgtca |
435 |
Q |
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| T |
8742951 |
caatgaatgaattgtattggaaagatgtca |
8742922 |
T |
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