View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_high_6 (Length: 374)
Name: NF14592_high_6
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_high_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 31910420 - 31910047
Alignment:
| Q |
1 |
atgtaaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtcccataattctatg |
100 |
Q |
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| T |
31910420 |
atgtaaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcagctcccacaattctatg |
31910321 |
T |
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| Q |
101 |
ctagcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggttacattacaccaaaa |
200 |
Q |
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| T |
31910320 |
ctagcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggttacattacaccaaaa |
31910221 |
T |
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| Q |
201 |
tttattgaagagtagtccagccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggacctgaatcaaatcc |
300 |
Q |
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| T |
31910220 |
tttattgaagagtagtccatccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattctgcatccacaaggacctgaatcaaatcc |
31910121 |
T |
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| Q |
301 |
caacagaaacagatgataaaattttaagtgtgaacgaaagcaaaaaactatgcaagatgaattcaaagtaaagt |
374 |
Q |
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| T |
31910120 |
caacagaaacagatgataaaattttaagtgtgaacgaaagcgaaaaactatgcaagatgaattcaaagtgaagt |
31910047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 373
Target Start/End: Complemental strand, 31901670 - 31901517
Alignment:
| Q |
216 |
tccagccccaatgttgaa-cttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggacctgaatcaaatcccaacagaaacagat |
314 |
Q |
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| T |
31901670 |
tccagccccattgttcaaacttctgaatatgtttaattgagccatcatgagtgcattctgcatccacaaggacctgaatcaaatccc------aacatat |
31901577 |
T |
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| Q |
315 |
gat-aaaattttaagtgtgaacgaaagcaaaaaactatgcaagatgaattcaaagtaaag |
373 |
Q |
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| T |
31901576 |
gatcaaaattttaagggtaaaactaagcaaacaactatgcatgatgaattcaaaataaag |
31901517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 31903049 - 31902967
Alignment:
| Q |
36 |
gattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtcccataattctatgctagcaaacatcatagat |
118 |
Q |
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| T |
31903049 |
gattgaatgaataatgcgatctgttgtggaccatggtccattttagtcgttcccaggattctatgctagcaaacatcatagat |
31902967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 13643290 - 13643241
Alignment:
| Q |
34 |
gagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagca |
83 |
Q |
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| T |
13643290 |
gagattgaatgaaaaatgtgatatgttgtggacaatggttcattttagca |
13643241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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