View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_high_9 (Length: 293)
Name: NF14592_high_9
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 2949546 - 2949272
Alignment:
| Q |
19 |
ccaagtaattaagagacatatcatgcaaggctagcaattgaacacatcatgtcatatgatatatgtatgcagttaacaaaacatattgagtgttttatta |
118 |
Q |
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| T |
2949546 |
ccaagtaattaagagacatatcatgcaaggctagcaattgaacacatcatgtcatatgatatatgtatgcagttaacaaaacatattgagtgttttatta |
2949447 |
T |
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| Q |
119 |
tagacagatatataatttcaattattctattctatctccaactactagtacagctcttttaacaaccaacctcacgaaatactatttgaaatcacaaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2949446 |
tagacagatatataatttcaattattctattctatctccaactactagtacagctcttttaacaaccaacttcacgaaaaactatttgaaatcacaaatt |
2949347 |
T |
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| Q |
219 |
tatattattttcttcaagtggttctagaatttccctgcctatttaactacattttctgatacttctttcttctca |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949346 |
tatattattttcttcaagtggttctagaatttccctgcctatttaactacattttctgatacttctttcttctca |
2949272 |
T |
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