View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_low_1 (Length: 683)
Name: NF14592_low_1
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 27 - 666
Target Start/End: Complemental strand, 51532754 - 51532115
Alignment:
| Q |
27 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
126 |
Q |
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| T |
51532754 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
51532655 |
T |
|
| Q |
127 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaatatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
226 |
Q |
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| T |
51532654 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaaaatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
51532555 |
T |
|
| Q |
227 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccacttgtttaatcactaaatacagtattatactgagacata |
326 |
Q |
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| T |
51532554 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattcccacttgtttaatcactaaatacagtattatactgagacata |
51532455 |
T |
|
| Q |
327 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccagaataaattgagctacag |
426 |
Q |
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| T |
51532454 |
catggttttaagttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaaccaaagatcccccaaaataaattgagctacag |
51532355 |
T |
|
| Q |
427 |
taaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagcacccggtccggagttcctgtattcact |
526 |
Q |
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| T |
51532354 |
taaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccccagcacccggtccggagttcatgtattcact |
51532255 |
T |
|
| Q |
527 |
gtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcatataggattgcatgaaaattgttcgcgaa |
626 |
Q |
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| T |
51532254 |
gtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttactcatataggattgcatgaaaattgttcgcgaa |
51532155 |
T |
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| Q |
627 |
taaggcctccaaggtctaccaaggtatgttcggatggttg |
666 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51532154 |
taaggcctccaaggtctaccaaggtatgttcggatggttg |
51532115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 206 - 669
Target Start/End: Complemental strand, 51526837 - 51526365
Alignment:
| Q |
206 |
tggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccac---ttgtttaatcacta |
302 |
Q |
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||||||||| | |||||||| ||| |||| ||||||||| |||||||||||||||||||||||||| ||| |||||| | || | ||||||||||| |
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| T |
51526837 |
tggggttaacagtaacccgtgtcc-ttttgcttttacatactttttctttgatacaataccaagaaccgttgtgaattacaacaactcttttaatcacta |
51526739 |
T |
|
| Q |
303 |
aatacagtattatactgagacatacatggtttta-------agttaaatttactttacactgtcaaacctgcagtgtaagttactccagcggaaggtaac |
395 |
Q |
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|||||| ||||||| | ||||||||||| || | |||||||||||||||||||| ||||||| | |||||||||||| || | |||||||||| |
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| T |
51526738 |
aatacaatattatatttagacatacatgaattaatttgtcaagttaaatttactttacactttcaaaccagaagtgtaagttacaccggtggaaggtaac |
51526639 |
T |
|
| Q |
396 |
caaagatcccccagaataaattgagctacagtaaacttttcagcctcgctcgaatcattcattacatggtacccagaccatttcacccgattcgctaccc |
495 |
Q |
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||||||| |||| |||||||||||| ||||| || || |||||| ||||||||||||| ||||||||| || |||||||||||||| || ||||||| |
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| T |
51526638 |
caaagattcccctcaataaattgagccacagtgaatttagtagcctcactcgaatcattcaatacatggtatcctgaccatttcacccggttagctaccc |
51526539 |
T |
|
| Q |
496 |
cagcacccggtccggagttcctgtattcactgtagtacaatgtatccaaaccaacacttccattgtactctagccacccttcgggacttatcgcgttact |
595 |
Q |
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| ||||||||||| |||||| |||||||| |||||||||||| | |||| ||| | | || || |||||| ||||||||| || ||||| |||| ||| |
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| T |
51526538 |
cggcacccggtccagagttcatgtattcagcgtagtacaatgtgttcaaagcaaaattaccgttccactctaaccacccttctggccttattgcgtcact |
51526439 |
T |
|
| Q |
596 |
catataggattgcatgaaaattgttcgcgaataaggcctccaaggtctaccaaggtatgttcggatggttgtga |
669 |
Q |
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||| ||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||| |
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| T |
51526438 |
catgtaggattgcataaaaattgttcgcgaataagtcttccagggtctaccaaggtatgttgggatggttgtga |
51526365 |
T |
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