View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_low_10 (Length: 305)
Name: NF14592_low_10
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 9012840 - 9012567
Alignment:
| Q |
19 |
ttaaaagcttatatttccattaatgaagacaaacttacatcgccaaatgtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaat |
118 |
Q |
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| T |
9012840 |
ttaaaagcttatatttccattaatgaagacaaacttacatcgccaaatgtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaat |
9012741 |
T |
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| Q |
119 |
ccatattcataaagatatttcgatccttttttct-aagaacacatttgcattaactcaaatattttctatataactaacccttctaataagcttctcatc |
217 |
Q |
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| T |
9012740 |
ccatattcataaagatatttcgatcctttttcctaaagaacacatttgcattaacacaaatattttctatataatgaactcttctaataagcttctcatc |
9012641 |
T |
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| Q |
218 |
acatcaaaaccacaaagacataatttgcgatacttactttgcatcatggcatccaaatccactacactctctgc |
291 |
Q |
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| T |
9012640 |
acatcaaaaccacaaagacatagtttgcgatacttactttgcatcatggcatccaaatccagtaccctctctgc |
9012567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 9020790 - 9020584
Alignment:
| Q |
69 |
acaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaatccatattcataaagatatttcgatccttttttctaagaacacatttgcat |
168 |
Q |
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| T |
9020790 |
acaaatcaatcggtgtaatattttttctaacatcgtttcaaatttttaatccatattcataaagatatttcgatccttatcctaaagaacatatttgcat |
9020691 |
T |
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| Q |
169 |
taactcaaatattttctatataactaacccttctaataagcttctcatcacatcaaaaccacaaagacataatttgcgatacttactttgcatcatggca |
268 |
Q |
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| T |
9020690 |
tgactcaaatattttctatataattaacccttctgataagcttctcatcatatcaaaacc-tataggcatagtttgcgatacttactttgtaccataaca |
9020592 |
T |
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| Q |
269 |
tccaaatc |
276 |
Q |
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|||||||| |
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| T |
9020591 |
tccaaatc |
9020584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 9020861 - 9020814
Alignment:
| Q |
19 |
ttaaaagcttatatttccattaatgaagacaaacttacatcgccaaat |
66 |
Q |
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| T |
9020861 |
ttaaaagctaatctttccattaatgaagacaaaattacatcgccaaat |
9020814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 1744030 - 1744082
Alignment:
| Q |
161 |
atttgcattaactcaaatattttctatataactaacccttctaataagcttct |
213 |
Q |
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|||||||||||||||| |||||||| |||| |||||||||| |||||||||| |
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| T |
1744030 |
atttgcattaactcaacaattttctaaataaataacccttcttataagcttct |
1744082 |
T |
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