View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_low_11 (Length: 302)
Name: NF14592_low_11
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 38920842 - 38921127
Alignment:
| Q |
26 |
ttatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaatgacatta |
125 |
Q |
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| T |
38920842 |
ttatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaatgacatta |
38920941 |
T |
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| Q |
126 |
agctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatatta |
225 |
Q |
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| T |
38920942 |
agctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatatta |
38921041 |
T |
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| Q |
226 |
gatatccgtt------------------agtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgatgatgtc |
293 |
Q |
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| T |
38921042 |
gatatccgtttatcgctaagcactggtgagtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtc |
38921127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 10544708 - 10544869
Alignment:
| Q |
17 |
atgaataagttatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagatagacagaca |
116 |
Q |
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| T |
10544708 |
atgaataagttatttattgttaattttccgaccataaacatttgtttgttatgaagtcatctggatgcatgttttagtaggttatagagatagacaggca |
10544807 |
T |
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| Q |
117 |
atgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtat |
178 |
Q |
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| T |
10544808 |
gtggcattaagctaagctggtggtacccataggaactaaaattttaatgcttgtttgagtat |
10544869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 10545135 - 10545188
Alignment:
| Q |
240 |
atgaggctttaatgaacatgtttttatatggaaactccttttgttgatgatgtc |
293 |
Q |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtc |
10545188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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