View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14592_low_7 (Length: 371)
Name: NF14592_low_7
Description: NF14592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14592_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 40859160 - 40858784
Alignment:
| Q |
1 |
tattaggaataagtgttagagaatttttgtatggtcacaaaacaaaatgcatagtgtctaggtacatacgcaaaagacatttttctaaagtaaaaagaaa |
100 |
Q |
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| T |
40859160 |
tattaggaataagcgttacataatttttgtatggtcactaaacaaaatgcatagtgtctaggcacatacgcaaaagac-tttttctaaagtaaaaagaaa |
40859062 |
T |
|
| Q |
101 |
aagaatgatcttatatttcagagaaatgtatctctttatgcgtatacatttaatcctgtgatcatgcaagatttgttcgaagaataatgtggtctatcta |
200 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
40859061 |
aagaatgattttatatttcagagatatgtatctctttatgcgtatacatttactcatgtgatcatgcaagatttgttggaagaataacgtggtctatcta |
40858962 |
T |
|
| Q |
201 |
actatgtaagggg--------------------acaaactacatggtaaattcatcaaagatgagttgttctagatcacaacctttgttttatctcctaa |
280 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40858961 |
actatgtaaggggacaattccatcattaaaggaacaaactacatggtgaattcatcaaagatgagttgttctagatcacaacctttattttatctcctaa |
40858862 |
T |
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| Q |
281 |
gcatgatatgactataaatagtggctcttcaagatcactttatacagccgttgattatagatgtgagatgttttatct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40858861 |
gcatgatatgactataaatagtggctcttcaagatcactttatacagccgttgattatagatgtgagatgttttatct |
40858784 |
T |
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