View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_high_1 (Length: 617)
Name: NF14593_high_1
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 40750530 - 40749927
Alignment:
| Q |
1 |
attaaggactaattaattttcattgatgcacccagcattgaattgatttaaactcatcatcggtgaatttatggaagcaaactttgcaagctcttgaggt |
100 |
Q |
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| T |
40750530 |
attaaggactaattaattttcattgatgcacccagcattgaattgatttaaactcatcatcgttgaatttatggaagcaaactttgcaagctcttgaggt |
40750431 |
T |
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| Q |
101 |
agaaattgatggttactcactccaagaaaatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgct |
200 |
Q |
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| T |
40750430 |
agaaattgatggttactcactccaagaaaatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgct |
40750331 |
T |
|
| Q |
201 |
gcttcattttctgattaatgaccatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccact |
300 |
Q |
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| T |
40750330 |
gcttcattttctgattaatgaccatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccact |
40750231 |
T |
|
| Q |
301 |
aaaaatggaaggattagtactgcttcttgctgaacctatttgagctgctctctgaagaagtgcagtagctgacattggagtattagtttgagccatttgt |
400 |
Q |
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| T |
40750230 |
aaatatggaaggattagtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgt |
40750131 |
T |
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| Q |
401 |
ataacatcggaaaaacctgatgaaacatgatcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaagtttggtcttt |
500 |
Q |
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| T |
40750130 |
ataacatcggaaaaacctgatgaaacatgatcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaaatttggtcttt |
40750031 |
T |
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| Q |
501 |
gctcatgatgaaatcctgcatgtggactaaactgttgaagattttgaagtccttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcat |
600 |
Q |
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| T |
40750030 |
gctcatgatgaaatcctgcatgtggactaaattgttgaatattttgaagtccttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcat |
40749931 |
T |
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| Q |
601 |
attg |
604 |
Q |
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| T |
40749930 |
attg |
40749927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 28495290 - 28495353
Alignment:
| Q |
315 |
tagtactgcttcttgctgaacctatttgagctgctctctgaagaagtgcagtagctgacattgg |
378 |
Q |
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| T |
28495290 |
tagtattgcttctagttgaacccatttgagctgctttttgcagaagagcagtagctgacattgg |
28495353 |
T |
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