View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_high_11 (Length: 288)
Name: NF14593_high_11
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6521011 - 6521283
Alignment:
| Q |
1 |
ctattaatgcatattactcagccacattgctaggtttagaatatggtgatgccaatgttgttgctactggatcaaccctaacagcattggaaattcaggc |
100 |
Q |
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| T |
6521011 |
ctattaatgcatattattctgctaccttgcttggcttagcatatggtgatgccaatgttgttgctatttggtcaaccctaactgctttcgaaattcaagc |
6521110 |
T |
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| Q |
101 |
atctaaaacttggtggcatgtggaagtgggaagcaatctgtacgaggaagaatttacaaaacagaacaggatggtctgtcttgtttggtcgaataagaga |
200 |
Q |
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| T |
6521111 |
atctaaaatgtggtatcatgtgaaagtgggagggaagctatacgaggaagaatttacaaaacagaacaggatggtcggtcttgtttggtcgaataagaga |
6521210 |
T |
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| Q |
201 |
aatatcgaactttggtttggttatcttggtgctaaacaatatttgcttggcattcagattttaccattgcttc |
273 |
Q |
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| T |
6521211 |
gatatcgaactttggtttggttatcttggtgctaaacaatgtttgcttggcattcaggttttaccattgcttc |
6521283 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 35231901 - 35231955
Alignment:
| Q |
31 |
taggtttagaatatggtgatgccaatgttgttgctactggatcaaccctaacagc |
85 |
Q |
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| T |
35231901 |
taggtttagaatatggtgatgccaatgttgttactactggaccaaccttaacagc |
35231955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9665746 - 9665821
Alignment:
| Q |
1 |
ctattaatgcatattactcagccacattgctaggtttagaatatggtgatgccaatgttgttgctactggatcaac |
76 |
Q |
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| T |
9665746 |
ctattaatgcatactatgcagctacattgatcggtttagcttatggtgatgccaatgttgtttcaattggatcaac |
9665821 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13536770 - 13536845
Alignment:
| Q |
1 |
ctattaatgcatattactcagccacattgctaggtttagaatatggtgatgccaatgttgttgctactggatcaac |
76 |
Q |
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| T |
13536770 |
ctattaatgcatactatgcagctacattgatcggtttagcttatggtgatgccaatgttgtttcaattggatcaac |
13536845 |
T |
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