View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_high_12 (Length: 276)
Name: NF14593_high_12
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_high_12 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 22082522 - 22082687
Alignment:
| Q |
12 |
agtgagatgaacatatatgtgtggcaatgtggctatgattgtgttcttactcttgatgagtttatgctaattaggttgcctctatagcaagcttgattgt |
111 |
Q |
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| T |
22082522 |
agtgatatgaacatatatgtgtggcaatgtggctatgattgtgttcttactcttgatgagtttatgataattaggttgcctctatagcaagcttgattgt |
22082621 |
T |
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| Q |
112 |
gtttcaatata-atgcatgttattataatcacattgaacgaaaaagtcatcagctgcaactcatat |
176 |
Q |
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| T |
22082622 |
gtttcaatgcatgttaatgttattataatcacattgaacgaaaaagtcatcagctgcaactcatat |
22082687 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 22065272 - 22065361
Alignment:
| Q |
21 |
aacatatatgtgtggcaatgtggct--atgattgtgttcttactcttgatgagtttatgctaattaggttgcctctatagcaagcttgat |
108 |
Q |
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| T |
22065272 |
aacatatatatgtggcaatgtggctctatgattgcattcctactctttatgagtttttgctaataatgttgcctctttggcaagcttgat |
22065361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 4061 - 3994
Alignment:
| Q |
41 |
tggctatgattgtgttcttactcttgatgagtttatgctaattaggttgcctctatagcaagcttgat |
108 |
Q |
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| T |
4061 |
tggctatgattgtgatcgtaatcttaatgagttatggctaattaggttgcctctatggcaagcttgat |
3994 |
T |
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