View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14593_high_15 (Length: 238)
Name: NF14593_high_15
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_high_15 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 4815139 - 4815338
Alignment:
| Q |
40 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccca-gaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
138 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||| |||| |||| |||||||| |
|
|
| T |
4815139 |
ctctctgtcctagaacacttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttccaaattctctcttgcacaacatatttgaaa |
4815238 |
T |
|
| Q |
139 |
ttgaaattgatatttggggttcaagtaattaggttgctctctctttttcaaattcgtttttatggttctctctccacctcaaaaccgcagttctacaagc |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4815239 |
ttgaaattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtatggttctctctccacctcaaaattgcagttctacaagc |
4815338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 23486095 - 23486294
Alignment:
| Q |
40 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccca-gaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
138 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||| |||||||||||||| ||||||| ||||| || |||||||||| |||| |||| |||||||| |
|
|
| T |
23486095 |
ctctctgtcctagaacatttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttcgaaattctctcttgcacaacatatttgaaa |
23486194 |
T |
|
| Q |
139 |
ttgaaattgatatttggggttcaagtaattaggttgctctctctttttcaaattcgtttttatggttctctctccacctcaaaaccgcagttctacaagc |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || | ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
23486195 |
ttgaaattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtacgattctctctccacctcgaaattgcagttctacaagc |
23486294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 23517448 - 23517653
Alignment:
| Q |
40 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccc-agaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
138 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||| |||| |||||||| |
|
|
| T |
23517448 |
ctctctgtcctagaacacttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttccaaattctctcttgcacaacatatttgaaa |
23517547 |
T |
|
| Q |
139 |
ttgaa------attgatatttggggttcaagtaattaggttgctctctctttttcaaattcgtttttatggttctctctccacctcaaaaccgcagttct |
232 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |||||||| |
|
|
| T |
23517548 |
ttgaaattgatattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtacggttctcgctccacctcaaaattgcagttct |
23517647 |
T |
|
| Q |
233 |
acaagc |
238 |
Q |
| |
|
|||||| |
|
|
| T |
23517648 |
acaagc |
23517653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University