View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14593_low_1 (Length: 659)

Name: NF14593_low_1
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14593_low_1
NF14593_low_1
[»] chr3 (1 HSPs)
chr3 (13-643)||(50372496-50373122)


Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 13 - 643
Target Start/End: Complemental strand, 50373122 - 50372496
Alignment:
Q  13 tcatcattctcacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttatctgttttctttgattacgc 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  50373122 tcatcattctaacgtttactttgtttctttggaacaagaggtttagctttgaaaatcaccaccccaggggttctgctttaaccgttttctttgattacgc 50373023  T
Q  113 tttatgaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50373022 tttatgaagctgttacttttgctgattctgttcacttgaataaataaattgtgtatacatatatataatctttttcgatgaataaataaattgtgtttgt 50372923  T
Q  213 atcaaaggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372922 atcaaaggtcattgacacatttacttgtagcaattgcattttaaaaagttacattctgcaacatttttattgagaatagcttaagttgttctcgtttatg 50372823  T
Q  313 cactaggctaatttaataatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtca 412  Q
    | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372822 ctctaggctaattt---aatatttgaattttaagcacatttgaaccttattctgaaaaccagccagactgtattactaggattttataacgggacggtca 50372726  T
Q  413 aatgaatttgtttcctcttgttatagttcctgctttctattctattattatcatttttctttattctaattcaatttgaatgctctgtttcttccttagc 512  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50372725 aatgaatttgtttcctcttgttatagttcccgctttctattctattattatcatttttc-ttattctaattcaatttgaatgctctgtttcttccttagc 50372627  T
Q  513 tcagttgatattggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgcaatggaaattgaaggaaatgtaagaggaaca 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50372626 tcagttgatattggttatatttgcaggaatttggaaggtcaaagttttggttcataaaaattacagtgcaaaggaaattgaaggaaatgtaagaggaaca 50372527  T
Q  613 aaggaaagcattctgaattcttagtgaaaag 643  Q
    |||||||||||||||||||||||||||||||    
T  50372526 aaggaaagcattctgaattcttagtgaaaag 50372496  T

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