View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14593_low_12 (Length: 305)

Name: NF14593_low_12
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14593_low_12
NF14593_low_12
[»] chr4 (11 HSPs)
chr4 (1-165)||(18699009-18699173)
chr4 (1-165)||(18655086-18655250)
chr4 (1-165)||(18731113-18731277)
chr4 (1-157)||(18723694-18723850)
chr4 (1-165)||(18679169-18679340)
chr4 (202-288)||(18679377-18679463)
chr4 (202-288)||(18699210-18699296)
chr4 (202-288)||(18723895-18723981)
chr4 (202-288)||(18731314-18731400)
chr4 (205-288)||(18655290-18655373)
chr4 (34-157)||(18074171-18074295)
[»] chr6 (27 HSPs)
chr6 (28-153)||(26802859-26802985)
chr6 (34-157)||(27427260-27427384)
chr6 (23-153)||(28781516-28781648)
chr6 (23-153)||(28786655-28786785)
chr6 (23-153)||(28792776-28792906)
chr6 (23-126)||(27604339-27604444)
chr6 (206-288)||(28786556-28786638)
chr6 (208-288)||(26646757-26646837)
chr6 (208-288)||(26752725-26752805)
chr6 (206-288)||(28781417-28781499)
chr6 (222-288)||(28792677-28792743)
chr6 (57-153)||(26646892-26646990)
chr6 (57-153)||(26752860-26752958)
chr6 (28-126)||(27592661-27592762)
chr6 (28-126)||(27679391-27679492)
chr6 (28-103)||(27698226-27698301)
chr6 (208-285)||(25580000-25580080)
chr6 (222-272)||(26861907-26861957)
chr6 (202-285)||(25538821-25538907)
chr6 (207-283)||(27337893-27337969)
chr6 (207-283)||(27398633-27398709)
chr6 (208-285)||(26143146-26143226)
chr6 (208-258)||(26884473-26884523)
chr6 (28-102)||(27677260-27677331)
chr6 (28-126)||(27706044-27706145)
chr6 (228-285)||(26056207-26056264)
chr6 (228-285)||(26076177-26076234)
[»] scaffold0419 (2 HSPs)
scaffold0419 (23-153)||(7902-8034)
scaffold0419 (206-288)||(7803-7885)
[»] scaffold0277 (4 HSPs)
scaffold0277 (23-153)||(13310-13442)
scaffold0277 (23-153)||(4347-4481)
scaffold0277 (206-288)||(4498-4580)
scaffold0277 (206-288)||(13459-13541)
[»] scaffold0003 (1 HSPs)
scaffold0003 (34-157)||(59979-60103)
[»] chr1 (6 HSPs)
chr1 (202-288)||(268167-268253)
chr1 (222-284)||(28127509-28127571)
chr1 (222-284)||(28164193-28164255)
chr1 (46-126)||(268010-268090)
chr1 (57-124)||(28164033-28164100)
chr1 (76-124)||(28127352-28127400)
[»] chr8 (1 HSPs)
chr8 (205-288)||(29273596-29273679)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18699009 - 18699173
Alignment:
Q  1 tgtccaagaatataaatccgtgtgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa 100  Q
    ||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  18699009 tgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatgtcctcatagtatatcatacatttctaactattttgacttataaataactaa 18699108  T
Q  101 tacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttaagatggtatcattgagg 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18699109 tacttgtttaaaaacgtaattaaaaaggtgtttccaatttaggctttaagatggtatcattgagg 18699173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18655086 - 18655250
Alignment:
Q  1 tgtccaagaatataaatccgtgtgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa 100  Q
    ||||||| || ||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18655086 tgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaa 18655185  T
Q  101 tacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttaagatggtatcattgagg 165  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18655186 tacttgtttaaaaatgtaaataaaaaggtgtttcgaatttaggctttaagatggtatcattgagg 18655250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18731113 - 18731277
Alignment:
Q  1 tgtccaagaatataaatccgtgtgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa 100  Q
    ||||||| || |||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18731113 tgtccaataagataagtcagtatgtaacaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataactaa 18731212  T
Q  101 tacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttaagatggtatcattgagg 165  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  18731213 tacttgtttaaaaatgtaaaaaaaaaggtgtttccaatttaggctttaagatggtattattgagg 18731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 18723694 - 18723850
Alignment:
Q  1 tgtccaagaatataaatccgtgtgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa 100  Q
    ||||||| || |||| || || |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18723694 tgtccaataagataagtcagtatgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaa 18723793  T
Q  101 tacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttaagatggtat 157  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18723794 tacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtat 18723850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18679169 - 18679340
Alignment:
Q  1 tgtccaagaatataaatccgtgtgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaa-------ctattttgacttataaa 93  Q
    ||||||| || |||| || || |||| |||||||||||||||| |||||| |||||||||||||||||||||||||       |||||||||||||||||    
T  18679169 tgtccaataagataagtcagtatgtaacaacatcacagtcacacccatgtactcataatatatcatacatttctaaattcaaactattttgacttataaa 18679268  T
Q  94 taacaaatacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttaagatggtatcattgagg 165  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| |||||||    
T  18679269 taactaatacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttcggttggtattattgagg 18679340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 18679377 - 18679463
Alignment:
Q  202 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18679377 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 18679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 18699210 - 18699296
Alignment:
Q  202 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699210 caagaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 18699296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 18723895 - 18723981
Alignment:
Q  202 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18723895 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgc 18723981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 18731314 - 18731400
Alignment:
Q  202 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18731314 caagaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgc 18731400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 18655290 - 18655373
Alignment:
Q  205 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18655290 gaattaagtgaagaggagtacccaggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgc 18655373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 18074295 - 18074171
Alignment:
Q  34 cacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaat-aaaaaggtgtt 132  Q
    |||| |||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||| || | |||||||||||| ||||| |||||||||||    
T  18074295 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggtgtt 18074196  T
Q  133 tccaatttaggctttaagatggtat 157  Q
     |  |||||||||||||||||||||    
T  18074195 acacatttaggctttaagatggtat 18074171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 26802985 - 26802859
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaataa-aaa 126  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||  || |||||||||| |||||||||||||||||||| |||| |||    
T  26802985 caacatcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatataagaaa 26802886  T
Q  127 ggtgtttccaatttaggctttaagatg 153  Q
    ||| ||||| |||||  ||||||||||    
T  26802885 ggtatttcccatttaacctttaagatg 26802859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 27427260 - 27427384
Alignment:
Q  34 cacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaat-aaaaaggtgtt 132  Q
    |||| |||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||| || | |||||||||||| ||||| |||||||||||    
T  27427260 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggtgtt 27427359  T
Q  133 tccaatttaggctttaagatggtat 157  Q
     |  |||||||||||||||||||||    
T  27427360 acacatttaggctttaagatggtat 27427384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 28781648 - 28781516
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaaat 121  Q
    |||| |||||||||| |||||||||||| |||| ||||||  |||||||||||||||||||||| || ||||||  ||||| ||||||||||||||||||    
T  28781648 tgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacgtaaat 28781549  T
Q  122 a-aaaaggtgtttccaatttaggctttaagatg 153  Q
    | |||| |||||||| |||||||||||||||||    
T  28781548 agaaaaagtgtttcccatttaggctttaagatg 28781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 28786785 - 28786655
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaaat 121  Q
    |||| |||||||||| |||||||||||| |||| ||||||  |||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||    
T  28786785 tgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaat 28786686  T
Q  122 a-aaaaggtgtttccaatttaggctttaagatg 153  Q
    | |||||||||||||   |||||||||||||||    
T  28786685 agaaaaggtgtttcc--cttaggctttaagatg 28786655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 28792906 - 28792776
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaaat 121  Q
    |||| |||||||||| |||||||||||| |||| ||||||  |||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||    
T  28792906 tgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaat 28792807  T
Q  122 a-aaaaggtgtttccaatttaggctttaagatg 153  Q
    | |||||||||||||   |||||||||||||||    
T  28792806 agaaaaggtgtttcc--cttaggctttaagatg 28792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 27604339 - 27604444
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcc--tcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaa 120  Q
    |||| |||||||| | |||||||||||| |  ||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27604339 tgtaacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaa 27604438  T
Q  121 taaaaa 126  Q
    ||||||    
T  27604439 taaaaa 27604444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 28786638 - 28786556
Alignment:
Q  206 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28786638 aattaagtaaatagtcgtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 28786556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 26646837 - 26646757
Alignment:
Q  208 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||| || ||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  26646837 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgc 26646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 26752805 - 26752725
Alignment:
Q  208 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||| || ||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||    
T  26752805 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgc 26752725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 28781499 - 28781417
Alignment:
Q  206 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||||  |  ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28781499 aattaagtaaattgtcgtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 28781417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 28792743 - 28792677
Alignment:
Q  222 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 28792677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 26646990 - 26646892
Alignment:
Q  57 aatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaataaaa--aggtgtttccaatttaggctttaagatg 153  Q
    ||||||| ||||| |||||||| ||||||| |||||||||   |||||||||||||||| | |||||||  | |||||||| ||||| |||||||||||    
T  26646990 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctatttaagctttaagatg 26646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 26752958 - 26752860
Alignment:
Q  57 aatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaataaaa--aggtgtttccaatttaggctttaagatg 153  Q
    ||||||| ||||| |||||||| ||||||| |||||||||   |||||||||||||||| | |||||||  | |||||||| ||||| |||||||||||    
T  26752958 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctatttaagctttaagatg 26752860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 27592661 - 27592762
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa---tacttgtttaaaaacgtaaataaa 124  Q
    |||||||||| |||||||||||| || | ||| ||| |||||||||||||||||| ||| |||||||||| ||   |||||||||||||  ||| |||||    
T  27592661 caacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27592760  T
Q  125 aa 126  Q
    ||    
T  27592761 aa 27592762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 27679492 - 27679391
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa---tacttgtttaaaaacgtaaataaa 124  Q
    |||||||||| |||||||||||| || | ||| ||| |||||||||||||||||| ||| |||||||||| ||   |||||||||||||  ||| |||||    
T  27679492 caacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27679393  T
Q  125 aa 126  Q
    ||    
T  27679392 aa 27679391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 27698226 - 27698301
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaatac 103  Q
    |||||||||| ||||||| |||| |||| ||||||| ||| |||||||||||||| ||| |||||||||| |||||    
T  27698226 caacatcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 25580080 - 25580000
Alignment:
Q  208 ttaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattga 285  Q
    |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  25580080 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattga 25580000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 26861957 - 26861907
Alignment:
Q  222 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagc 272  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  26861957 gtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagc 26861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 25538907 - 25538821
Alignment:
Q  202 caagaattaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattga 285  Q
    ||||| |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| | | ||||||| ||||||||||    
T  25538907 caagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattga 25538821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 27337893 - 27337969
Alignment:
Q  207 attaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccatt 283  Q
    ||||||||||| || ||||||  |||||||||||| |||||| ||||||||||||| ||| ||||| | ||||||||    
T  27337893 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatt 27337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 27398633 - 27398709
Alignment:
Q  207 attaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccatt 283  Q
    ||||||||||| || ||||||  |||||||||||| |||||| ||||||||||||| ||| ||||| | ||||||||    
T  27398633 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatt 27398709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 26143226 - 26143146
Alignment:
Q  208 ttaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattga 285  Q
    |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| | | ||||||| ||||||||||    
T  26143226 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattga 26143146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 26884523 - 26884473
Alignment:
Q  208 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagca 258  Q
    |||||||||| ||  |||||| |||||||||||||||||||||||||||||    
T  26884523 ttaagtaaagtgggatacccaagactaaaatggtagccggacaagttagca 26884473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 27677260 - 27677331
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaata 102  Q
    |||||||||| |||||||||||| ||   ||| ||| |||||||||||||||||| ||| |||||||||| ||||    
T  27677260 caacatcacaatcacatccatgtact---aatgtattatacatttctaactatttcgacatataaataactaata 27677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 27706044 - 27706145
Alignment:
Q  28 caacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaa---tacttgtttaaaaacgtaaataaa 124  Q
    ||||||| || |||||||||||| || | ||| ||| || ||||||||||||||| ||| |||||||||| ||   |||||||||||||  ||| |||||    
T  27706044 caacatcccaatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27706143  T
Q  125 aa 126  Q
    ||    
T  27706144 aa 27706145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 26056264 - 26056207
Alignment:
Q  228 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattga 285  Q
    ||||||| |||| ||||||||||||||||||||||  || ||||| | ||||||||||    
T  26056264 aggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattga 26056207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 26076234 - 26076177
Alignment:
Q  228 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattga 285  Q
    ||||||| |||| ||||||||||||||||||||||  || ||||| | ||||||||||    
T  26076234 aggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattga 26076177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 8034 - 7902
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaaat 121  Q
    |||| |||||||||| |||||||||||| |||| ||||||  |||||||||||||||||||||| || || |||  ||||||||||||||||||||||||    
T  8034 tgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat 7935  T
Q  122 a-aaaaggtgtttccaatttaggctttaagatg 153  Q
    | |||| |||||||| |||||||||||||||||    
T  7934 agaaaaagtgtttcccatttaggctttaagatg 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 7885 - 7803
Alignment:
Q  206 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||| ||  ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  7885 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 13310 - 13442
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaaat 121  Q
    |||| |||||||||| |||||||||||| |||| ||||||  |||||||||||||||||||||| || || |||  ||||||||||||||||||||||||    
T  13310 tgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat 13409  T
Q  122 a-aaaaggtgtttccaatttaggctttaagatg 153  Q
    | |||| |||||||| |||||||||||||||||    
T  13410 agaaaaagtgtttcccatttaggctttaagatg 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 4347 - 4481
Alignment:
Q  23 tgtaccaacatcacagtcacatccatgtcctcataatatat--catacatttctaactattttgacttataaataa-caaatacttgtttaaaaacgtaa 119  Q
    |||| |||||||||| |||||||||||| ||||||||||||   ||||||||||||||||| |||| || || |||  ||||||||||||||||||||||    
T  4347 tgtaacaacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaa 4446  T
Q  120 ata-aaaaggtgtttccaatttaggctttaagatg 153  Q
    ||| ||||||||||||| |||||||||||||||||    
T  4447 atataaaaggtgtttcccatttaggctttaagatg 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 4498 - 4580
Alignment:
Q  206 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  4498 aattaagtaaataggcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 4580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 13459 - 13541
Alignment:
Q  206 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||| ||  ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  13459 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgc 13541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 60103 - 59979
Alignment:
Q  34 cacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaat-aaaaaggtgtt 132  Q
    |||| |||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||| || | |||||||||||| ||||| |||||||||||    
T  60103 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggtgtt 60004  T
Q  133 tccaatttaggctttaagatggtat 157  Q
     |  |||||||||||||||||||||    
T  60003 acacatttaggctttaagatggtat 59979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 268167 - 268253
Alignment:
Q  202 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    |||||||||||||||||| |||||||| ||||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||    
T  268167 caagaattaagtaaagagcagtacccacgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgc 268253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 28127509 - 28127571
Alignment:
Q  222 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattg 284  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  28127509 gtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattg 28127571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 28164193 - 28164255
Alignment:
Q  222 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattg 284  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  28164193 gtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattg 28164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 268010 - 268090
Alignment:
Q  46 catgtcctcataatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaataaaaa 126  Q
    ||||| |||| ||||||| |||| ||||||||||||| | | |||||| ||| ||||||| |||| |||||||||||||||    
T  268010 catgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaaacgtaaataaaaa 268090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 28164033 - 28164100
Alignment:
Q  57 aatatatcatacatttctaactattttgacttataaataacaaatacttgtttaaaaacgtaaataaa 124  Q
    |||| ||||||||  ||||||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  28164033 aatacatcatacaactctaactattttgacatataaatatcttatacttgtttaaaaacataaataaa 28164100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 28127352 - 28127400
Alignment:
Q  76 actattttgacttataaataacaaatacttgtttaaaaacgtaaataaa 124  Q
    ||||||||||| |||||||| |  |||||||||||||||| ||||||||    
T  28127352 actattttgacatataaataccttatacttgtttaaaaacataaataaa 28127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 29273596 - 29273679
Alignment:
Q  205 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgc 288  Q
    ||||||||||||||| |||||||| ||||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||    
T  29273596 gaattaagtaaagagcagtacccatgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgc 29273679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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