View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14593_low_13 (Length: 304)

Name: NF14593_low_13
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14593_low_13
NF14593_low_13
[»] chr3 (1 HSPs)
chr3 (1-296)||(42777873-42778168)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 42777873 - 42778168
Alignment:
Q  1 taactgaatctatatatgaaagggatgttcctgtgagtatgacatcatctacataaatcgtcaacgttgtaaagatagtagaagtccttcttgtgaataa 100  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||    
T  42777873 taactgaatctatatatgaaatggatgttcctgtgagcatgacatcatctacataaaccgtcaacgttgtaaagatagtagaagttcttcttatgaataa 42777972  T
Q  101 ggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaaccattggtgacttgcttgttttaaaccataagagatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42777973 ggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaaccattggtgacttgcttgttttaaaccataagagatt 42778072  T
Q  201 tcagtaatctgcaaacttgactaggatttgaggaagtcacaccaagaggaagctttatataaacctcttcattattgttgtgtgtatccctttgct 296  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42778073 tcagtaatctgcaaacttgaataggatttgaggaagtcacaccaagaggaagctttatataaacctcttcattattgttgtgtgtatccctttgct 42778168  T

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