View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_low_14 (Length: 299)
Name: NF14593_low_14
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 31719458 - 31719164
Alignment:
| Q |
1 |
ccaccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31719458 |
ccaccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatc |
31719359 |
T |
|
| Q |
101 |
accattgaaattgttgacaaaagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || |||||||||||||||||| |
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| T |
31719358 |
accattgaaattgttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagttt |
31719259 |
T |
|
| Q |
201 |
ggtatgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
295 |
Q |
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| T |
31719258 |
ggtatgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
31719164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 31722063 - 31721763
Alignment:
| Q |
1 |
ccaccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatc |
100 |
Q |
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||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31722063 |
ccaccggccgacggaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatc |
31721964 |
T |
|
| Q |
101 |
accattgaaattgttgacaaaagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagttt |
200 |
Q |
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| T |
31721963 |
accattgaaattgttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagttt |
31721864 |
T |
|
| Q |
201 |
ggtatgaaacggattccaaaggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacct |
294 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31721863 |
ggtatgaaacggattccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacct |
31721764 |
T |
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| Q |
295 |
t |
295 |
Q |
| |
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| |
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| T |
31721763 |
t |
31721763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 31711354 - 31711057
Alignment:
| Q |
4 |
ccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcacc |
103 |
Q |
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|||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31711354 |
ccggccgacggaagaagatgcaaatcataaggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctaagatggatgataagatcacc |
31711255 |
T |
|
| Q |
104 |
attgaaattgttgacaaaagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagtttggt |
203 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||| || || |||||||||||||||||| |
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| T |
31711254 |
attgaaattgttgacaaaagtcaagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggt |
31711155 |
T |
|
| Q |
204 |
atgaaacggattccaaaggctcgtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
295 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31711154 |
atgaaacggattccaaaggctcgtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
31711057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 31716509 - 31716237
Alignment:
| Q |
4 |
ccggccgacgaaagaagatgcaggtaattcggatgagaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcacc |
103 |
Q |
| |
|
|||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
31716509 |
ccggccgacggaagaagatgcagatcatacggatgagaagtccacgtagggattggaagatcagaacaagtccaaagctaagatggatgataagat---- |
31716414 |
T |
|
| Q |
104 |
attgaaattgttgacaaaagtcaagaatacatatatgaactttatgttgaagttagccggtaacgtaggaggggcattgaacactgataacaagtttggt |
203 |
Q |
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| |||||||| |||||||||| ||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31716413 |
---------ggtgacaaaaatcaagaatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggt |
31716323 |
T |
|
| Q |
204 |
atgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaa |
289 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||| |||||||||| |
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| T |
31716322 |
gtgaaaaggattccaaaggctcgtcaagtatctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaa |
31716237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 31726049 - 31726155
Alignment:
| Q |
180 |
ttgaacactgataacaagtttggtatgaaacggattccaaaggctcgtcaagtgtctaaaggttattctggtgatgcgtttgaggctaggcttatatttg |
279 |
Q |
| |
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|||||||||||||||| |||||| ||||| |||||||||||||| |||||| ||||| | |||| | |||||||||| |||| || ||| |||| || |
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| T |
31726049 |
ttgaacactgataacatctttggtgggaaacagattccaaaggctcctcaagtttctaaggattatgccagtgatgcgttggaggttaagctcatatatg |
31726148 |
T |
|
| Q |
280 |
agatttc |
286 |
Q |
| |
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||||||| |
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| T |
31726149 |
agatttc |
31726155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 31730169 - 31730222
Alignment:
| Q |
242 |
ttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
295 |
Q |
| |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggcctt |
31730222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 31725929 - 31726041
Alignment:
| Q |
39 |
agaagtccacgtagggattggaagatcagaacaagcccaaagctgagatggatgataagatcaccattgaaattgttgacaaaagtcaagaatacatata |
138 |
Q |
| |
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||||| ||||||| | ||||| ||||| ||||| ||||| ||| |||||| |||| | ||||||||||||| |||||||||| | ||||| |||| |
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| T |
31725929 |
agaagcccacgtaagttttggaggatcaaaacaatcccaaggcttagatgggtgattaaatcaccattgaaaatgttgacaaattttaagaagggttata |
31726028 |
T |
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| Q |
139 |
tgaactttatgtt |
151 |
Q |
| |
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||||||||||||| |
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| T |
31726029 |
tgaactttatgtt |
31726041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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