View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14593_low_18 (Length: 260)
Name: NF14593_low_18
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 42777636 - 42777397
Alignment:
| Q |
2 |
tttagatattttatctgacaaacacattgctttggatccaacatttcatgagcgcaccaagcatattggcgttggttgtcacatagttcgtgagaagttg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42777636 |
tttagatattttatctgacaaacacattgctttggatcctacatttcatgagcgcaccaagcatattggcgttggttgtcacatagttcgtgagaagtta |
42777537 |
T |
|
| Q |
102 |
cacacatttttgtccatcttcttactatcacctatatgaatctattgaccgactttttcatcaaggaacttgaatttgctcccttttagaggcttccttt |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42777536 |
cacacatttttttccatcttcttactatcacctatatgaatctattgaccgactttttcatcaaggaacttgaatttgctcccttttagaggcttccttt |
42777437 |
T |
|
| Q |
202 |
caaactaggcatgtttaatgtacaagctccacgttgcggg |
241 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42777436 |
caaactaggcatgtttaatgtacatgctccacgttgcggg |
42777397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University