View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_low_23 (Length: 237)
Name: NF14593_low_23
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47528664 - 47528883
Alignment:
| Q |
1 |
ttgtgaactatccgatctgaatccaatatcaaccaatgcactgactgcgtgaatgcagcaatattccaactggaaggaatccattttcaattgatacatg |
100 |
Q |
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| T |
47528664 |
ttgtgaaatgtccgatctgaatccagtagtagccattgcactgattgcgtgaatccagcgatattccaactagaaggaatccatttccaattgatttatg |
47528763 |
T |
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| Q |
101 |
tgtattgacaatcatctgatatgctcatttattccctttatgttgttctcatttttaaggtgaatgcggctaaagagagatgtaaaagattaactggatc |
200 |
Q |
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| T |
47528764 |
tgtatttgcaatgatctgacatgctcatttattccctttatattgttctca-ttttaaggtgaagatggctgaagagacagttaaaagatttactggatc |
47528862 |
T |
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| Q |
201 |
aattccggcgtttaatgcaat |
221 |
Q |
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| T |
47528863 |
gaacccggtgtttaatgcaat |
47528883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 47550675 - 47550737
Alignment:
| Q |
159 |
ggtgaatgcggctaaagagagatgtaaaagattaactggatcaattccggcgtttaatgcaat |
221 |
Q |
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| T |
47550675 |
ggtgaatgcggctaaagagagatgtaaaagattaactggatcaattccggcgtttaatgcaat |
47550737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 45123850 - 45123765
Alignment:
| Q |
1 |
ttgtgaactatccgatctgaatccaatatcaaccaatgcactgactgcgtgaatgcagcaatattccaactggaaggaatccattt |
86 |
Q |
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| T |
45123850 |
ttgtgaactatccgatccgaatccaatggtcaccaatgcattgacaacgtgaatgcaggaatatctcaattgtaaggtatccattt |
45123765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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