View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_low_4 (Length: 402)
Name: NF14593_low_4
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 115 - 387
Target Start/End: Original strand, 37920605 - 37920877
Alignment:
| Q |
115 |
atctatttttatgtatagaaaaacccttaacctactttttaccaaactattgaacannnnnnnngtacaaactattgaacatttttatgcattataaaaa |
214 |
Q |
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| T |
37920605 |
atctatttttacgtatagaaaaacccttaacctactttttaccaaactattgaacattttttttgtacaaactattgaacatttttatgcattataaaaa |
37920704 |
T |
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| Q |
215 |
gtgaaaaaatgtcattcgtcaacttcttttttcttttgacatgtcacttaattatttttacgttattttctacaaataaattaccgaagagtgnnnnnnn |
314 |
Q |
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| T |
37920705 |
gtgaaaaaatgtcattcgtcaacttcttttttcttttgacatgtcacttaattatttttacgttattttctacaaataaattaccgaagagtgttttttt |
37920804 |
T |
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| Q |
315 |
agggaaaattcctaaagaatgttgtttcaaaatacaatttaattaggtcaatttattcttcttatttgtatgt |
387 |
Q |
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| T |
37920805 |
agggaaaattcctaaagaatgttgtttcaaaatacaatttaattaggtcaatttattcttcttatttgtatgt |
37920877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 37920495 - 37920529
Alignment:
| Q |
6 |
aagaatatatctagtccaactccaatgtagatttg |
40 |
Q |
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| T |
37920495 |
aagaatatatccagtccaactccaatgtagatttg |
37920529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 10578998 - 10579087
Alignment:
| Q |
195 |
atttttatgcattataaaaagtgaaaaaatgtcattcgtcaacttcttttttct-tttgacatgtcacttaattatttttacgttattttc |
284 |
Q |
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| T |
10578998 |
atttttattcattataaaaagtgacaagatgtcattgatcacctt-tttcttctctttggtatgtcacttaattgtttttatgttattttc |
10579087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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