View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14593_low_7 (Length: 336)

Name: NF14593_low_7
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14593_low_7
NF14593_low_7
[»] chr4 (2 HSPs)
chr4 (213-279)||(6071828-6071894)
chr4 (233-279)||(50234983-50235029)
[»] chr3 (2 HSPs)
chr3 (233-279)||(840625-840671)
chr3 (219-260)||(36755343-36755384)
[»] chr8 (3 HSPs)
chr8 (212-279)||(4905779-4905846)
chr8 (212-260)||(26723492-26723540)
chr8 (307-336)||(29377861-29377890)


Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 6071828 - 6071894
Alignment:
Q  213 tgtgggatccacttggacaaatggcagtgtgtgattggataatgaagggtgtatataaagtggtatg 279  Q
    ||||||| |||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  6071828 tgtgggacccacttagacagatggcagtgtgtgattgaataatgaaaggtgtgtataaagtggtatg 6071894  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 50235029 - 50234983
Alignment:
Q  233 atggcagtgtgtgattggataatgaagggtgtatataaagtggtatg 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  50235029 atggcagtgtgtgattggataatgaagggtgtatgtaaagtggtatg 50234983  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 840625 - 840671
Alignment:
Q  233 atggcagtgtgtgattggataatgaagggtgtatataaagtggtatg 279  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  840625 atggcagtgtgtgattggataatgaaaggtgtatgtaaagtggtatg 840671  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 36755343 - 36755384
Alignment:
Q  219 atccacttggacaaatggcagtgtgtgattggataatgaagg 260  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  36755343 atccacttggacagatggcaatgtatgattggataatgaagg 36755384  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 4905779 - 4905846
Alignment:
Q  212 ttgtgggatccacttggacaaatggcagtgtgtgattggataatgaagggtgtatataaagtggtatg 279  Q
    |||||||| ||||||  ||| || |||||||||||||| |||||||||||||| |||| |||||||||    
T  4905779 ttgtgggacccacttaaacagatagcagtgtgtgattgaataatgaagggtgtgtatagagtggtatg 4905846  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 26723540 - 26723492
Alignment:
Q  212 ttgtgggatccacttggacaaatggcagtgtgtgattggataatgaagg 260  Q
    |||||||| |||||| |||| ||||||||||||||||| ||||||||||    
T  26723540 ttgtgggacccacttagacagatggcagtgtgtgattgaataatgaagg 26723492  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 29377861 - 29377890
Alignment:
Q  307 ccctagtttttatgtgggagtgttttagca 336  Q
    ||||||||||||||||||||||||||||||    
T  29377861 ccctagtttttatgtgggagtgttttagca 29377890  T

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