View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14593_low_8 (Length: 327)
Name: NF14593_low_8
Description: NF14593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14593_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 37557473 - 37557199
Alignment:
| Q |
11 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
110 |
Q |
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| T |
37557473 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
37557374 |
T |
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| Q |
111 |
tcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaatacaaatta |
210 |
Q |
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| T |
37557373 |
tcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaatacaaatta |
37557274 |
T |
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| Q |
211 |
atttcttaaagaccaagtcctctcctataaactaggattttattctaacagaaaaatactactttaactctttca |
285 |
Q |
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| T |
37557273 |
atttcttaaagaccaagtcctctcctataaactaggattttattctaacagacaaatactactttaactctttca |
37557199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 37561811 - 37561537
Alignment:
| Q |
11 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
110 |
Q |
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| T |
37561811 |
agaacctgtgtttaagcgtttggaaactgatagtaaagaacacaacaattggactaaatgactcaattttattaattgcaatgttggcttaaatagccat |
37561712 |
T |
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| Q |
111 |
tcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaatacaaatta |
210 |
Q |
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| T |
37561711 |
tcaacacacgataaaaaacacaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaactgaaacaaattaaaacaaatacaaatta |
37561612 |
T |
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| Q |
211 |
atttcttaaagaccaagtcctctcctataaactaggattttattctaacagaaaaatactactttaactctttca |
285 |
Q |
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| T |
37561611 |
atttcttaaagaccaagtcctatcctataaactaggattttattctaacagacaaatactactttaactctttca |
37561537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 21469724 - 21469978
Alignment:
| Q |
11 |
agaacctgtgtttaagcgtttggaaactgatagcaaagaacacaacaattggactaaatgactcaatttt-attaattgcaatgttggcttaaatagcca |
109 |
Q |
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| T |
21469724 |
agaacctgtatttaagtgtttggaaactgatagcaaagaacacaacaattggactgaatgactcagtttttattgattgcaatgttggcttaaatagcct |
21469823 |
T |
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| Q |
110 |
ttcaacacacgataaaaaacacaactgaaagcaacccacttagctag---aataaaggctagtggtgagtggcaactgaaacaaattaaaacaaatacaa |
206 |
Q |
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| T |
21469824 |
tttaacacatgatgaaaacaacaaccgaaagcaacccacttagctactaaaataaaggctagtggtgagtagtaactgaaacaaattaaaacaaataaaa |
21469923 |
T |
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| Q |
207 |
attaatttcttaaagaccaagtcctctcctataaactaggattttattctaacag |
261 |
Q |
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| T |
21469924 |
attaaattcataaagactaagtcttctcctataaactagaattttattctaacag |
21469978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 255
Target Start/End: Original strand, 30741593 - 30741824
Alignment:
| Q |
28 |
gtttggaaactgatagcaaagaacacaacaattggactaaatgactcaatttt-attaattgcaatgttggcttaaatagccattcaacacacgataaaa |
126 |
Q |
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||||||||||| | ||||||||||||||||||| |||||||| ||||| |||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |
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| T |
30741593 |
gtttggaaactcaaagcaaagaacacaacaattagactaaattactcagtttttattaattgcaacgttggcttaaataaccattcaacacacgatgaaa |
30741692 |
T |
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| Q |
127 |
aac-acaactgaaagcaacccacttagctagaataaaggctagtggtgagtggcaac-tgaaacaaatt-aaaacaaatacaaattaatttcttaaagac |
223 |
Q |
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||| | ||| ||| |||||||| ||||||| |||||| ||||||||||||| | ||| |||||||||| |||||||||||||||||||||| ||||||| |
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| T |
30741693 |
aacaataacagaatgcaacccagttagctaaaataaaagctagtggtgagtagtaacaggaaacaaattaaaaacaaatacaaattaatttcctaaagac |
30741792 |
T |
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| Q |
224 |
caagtcctctcctataaactaggattttattc |
255 |
Q |
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||| || | |||||||||||||||| |||||| |
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| T |
30741793 |
caaatcttttcctataaactaggatgttattc |
30741824 |
T |
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