View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14594_high_1 (Length: 237)
Name: NF14594_high_1
Description: NF14594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14594_high_1 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 35449761 - 35449543
Alignment:
| Q |
19 |
tcttcttgtgctgttactcttgtttgttcaagctctaaagttgtgtatagaagtgattgtctcaaatcctccattgactgcataacaattaagaatcatt |
118 |
Q |
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| T |
35449761 |
tcttcttgtgctgttactcttgtttgttcaagctctaaagttgtgtatagaagtgattgtctcaaatcctccattgactgcataacaattaagaatcatt |
35449662 |
T |
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| Q |
119 |
agtactcaaattgcaaaaaacatgtaagtaaagttatgaagcacagacactcctcgaattagagacgtgttctggtgtcagacatgtgtcgtgcccgaca |
218 |
Q |
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| T |
35449661 |
agtactcaaattgcaaaaaacatgtaagtaaagttatgaagcacagacactcctcggattagagacgtgttctggtgtcggacatgtgtcgtgtctgaca |
35449562 |
T |
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| Q |
219 |
catataattacactgaatt |
237 |
Q |
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| T |
35449561 |
catataattacactgaatt |
35449543 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 21864926 - 21864863
Alignment:
| Q |
153 |
tatgaagcacagacactcctcgaattagagacgtgttctggtgtcagacatgtgtcgtgcccgaca |
218 |
Q |
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| T |
21864926 |
tatgaagcacagacactcctcgaatt--agacgtgtcccggtgtcggacacgtgtcgtgtccgaca |
21864863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 27732215 - 27732268
Alignment:
| Q |
185 |
gtgttctggtgtcagacatgtgtcgtgc-ccgacacatataattacactgaatt |
237 |
Q |
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| T |
27732215 |
gtgtcctggtgtcggacatatgtcgtgtaccgacacatataattacactgaatt |
27732268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 27932353 - 27932289
Alignment:
| Q |
153 |
tatgaagcacagacactcctcgaattagagacgtgttctggtgtcagacatgtgtcgtgcccgacac |
219 |
Q |
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| T |
27932353 |
tatgaagcacaaacactcctcgaatt--aggcgtgtcctggtgtccgacacgtgtcgtgtccgacac |
27932289 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 26553868 - 26553817
Alignment:
| Q |
149 |
aagttatgaagcacagacactcctcgaattagagacgtgttctggtgtcagaca |
202 |
Q |
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| T |
26553868 |
aagttatgaagcacatacactcctcgaatt--aggcgtgttctgatgtcagaca |
26553817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 40613516 - 40613480
Alignment:
| Q |
201 |
catgtgtcgtgcccgacacatataattacactgaatt |
237 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |
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| T |
40613516 |
catgtgttgtgtccgacacatataattacactgaatt |
40613480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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