View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14594_low_1 (Length: 368)
Name: NF14594_low_1
Description: NF14594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14594_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 61 - 368
Target Start/End: Complemental strand, 47212012 - 47211705
Alignment:
| Q |
61 |
agattagtacaaaccattagggcaatggaaatgacaagttgaggtcggttattgcgcttgaggagatttctgaatggatgtttcacctctttagcaacac |
160 |
Q |
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| T |
47212012 |
agattagtacaaaccattagagcaatggaaatgacaagttgaggtcggttattgcgcttgaggagatttctgaatggatgtttcacctctttagcaacac |
47211913 |
T |
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| Q |
161 |
gacttgcttctactaactctaagaactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaat |
260 |
Q |
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| T |
47211912 |
gacttgcttctactaactctaagaactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaat |
47211813 |
T |
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| Q |
261 |
gagactatttggggtgtccactaccaagtaagcccctaaagtgaggagtaatgctgggatacctcccaatcccagagatatcctccaaccccaatgacct |
360 |
Q |
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| T |
47211812 |
gagactatttggggtgtccactaccaagtaagcccctaaagtgaggagtaatgctgggatacctcccaatcccagagatatcctccaaccccaatgacct |
47211713 |
T |
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| Q |
361 |
ttgattct |
368 |
Q |
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|||||||| |
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| T |
47211712 |
ttgattct |
47211705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47212107 - 47212051
Alignment:
| Q |
1 |
acgtatttgactacaattctctatatataaaacaagaattgttaagcgattgcaaccatga |
61 |
Q |
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| T |
47212107 |
acgtatttgactacaattctctata----aaacaagaattgttaagcgattgcaaccatga |
47212051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 286
Target Start/End: Original strand, 749098 - 749299
Alignment:
| Q |
85 |
atggaaatgacaagttgaggtcggttattgcgcttgaggagatttctgaatggatgtttcacctctttagcaacacgacttgcttctactaa-ctctaag |
183 |
Q |
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|||||||||| ||||||||||||||| ||||| ||||| ||||| || || || || || ||||||||||||||||||||||| || || || ||| ||| |
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| T |
749098 |
atggaaatgataagttgaggtcggttcttgcgtttgagaagattcctaaaagggtgcttgacctctttagcaacacgacttgcctc-acaaagctccaag |
749196 |
T |
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| Q |
184 |
aactcgggttcaatgttgtccgtgccacgaatctttctcagaacagcttttcctttgtccaagtgaccacgttcaatgagactatttggggtgtccacta |
283 |
Q |
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|||||||||||||||||||| ||||||||||||||| | || ||||||||||||| || | | ||||||| ||||||||||| || ||||||||||| | |
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| T |
749197 |
aactcgggttcaatgttgtcagtgccacgaatctttttaagtacagcttttccttcttcaaggcgaccacgctcaatgagactgttgggggtgtccacaa |
749296 |
T |
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| Q |
284 |
cca |
286 |
Q |
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||| |
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| T |
749297 |
cca |
749299 |
T |
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