View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14595_low_4 (Length: 254)
Name: NF14595_low_4
Description: NF14595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14595_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4311076 - 4311311
Alignment:
| Q |
1 |
aagtttgtagaagattggagggaatgaaaccacgaaacaaattaagcggttaaattaagcgaaaaataatctcagaatcgcgttttaatcgagattccac |
100 |
Q |
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| T |
4311076 |
aagtttgtagaagattggagggaatgaaaccacgaaacaaattaagcggttaaattaagcgaaaaataatctcagaatcgcgttttaatcgagattccac |
4311175 |
T |
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| Q |
101 |
gtttggtagaagttgaagttgatgatcctattccaattccaataaccgtcaccatgcctaaaatgaagcaactccttcgaaagcttcatatcggtggtgg |
200 |
Q |
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| T |
4311176 |
gtttggtagaagttgaagttgatgatcctattccaattccaataaccgtcaccatgcctaaaatgaagcaactccttcgaaagcttcatatcggtggtgg |
4311275 |
T |
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| Q |
201 |
cgctcctacttctccaatcaacaatcacaatacaat |
236 |
Q |
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| T |
4311276 |
cgctcctacttctccaatcaacaatcacaatacaat |
4311311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43296871 - 43296814
Alignment:
| Q |
1 |
aagtttgtagaagattggagggaatgaaaccacgaaacaaattaagcggttaaattaa |
58 |
Q |
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|||||||||| ||||||||||| ||| || ||||| |||||||||| ||||||||||| |
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| T |
43296871 |
aagtttgtaggagattggaggggatggaatcacgacacaaattaaggggttaaattaa |
43296814 |
T |
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