View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14596_high_2 (Length: 441)

Name: NF14596_high_2
Description: NF14596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14596_high_2
NF14596_high_2
[»] chr4 (9 HSPs)
chr4 (13-425)||(53489283-53489696)
chr4 (66-167)||(53492631-53492732)
chr4 (42-167)||(53498936-53499061)
chr4 (281-414)||(53492376-53492509)
chr4 (281-414)||(53498690-53498823)
chr4 (49-167)||(53502074-53502192)
chr4 (42-167)||(53494978-53495103)
chr4 (52-164)||(52590713-52590825)
chr4 (276-389)||(53494729-53494842)
[»] chr7 (2 HSPs)
chr7 (42-167)||(37188571-37188696)
chr7 (281-425)||(37188327-37188471)
[»] chr2 (2 HSPs)
chr2 (49-164)||(16942130-16942245)
chr2 (49-164)||(17012795-17012910)
[»] chr3 (2 HSPs)
chr3 (281-421)||(38214693-38214833)
chr3 (281-341)||(16286168-16286228)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 53489283 - 53489696
Alignment:
Q  13 cagagaaaagaataggtatgaaaacttgtagttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaa 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  53489283 cagagaaaagaataggtatgaaaacttgtagttgggtcaaaccataaatagaattgttgctctctgtcccctttgccttgggtgtacacatttgtatgaa 53489382  T
Q  113 ctatgtaaggatcaccactcaaatttcccaagaattcaaagtctatttcatcccacaatgacccttctgaacgtaactgcaatgcatgatgcagaaattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53489383 ctatgtaaggatcaccactcaaatttcccaagaattcaaagtctatttcatcccacaatgacccttctgaacgtaactgcaatgcatgatgcagaaattg 53489482  T
Q  213 aaatattaattatgattaaactctccat-aaaaaacattaaacatattaataaggattaaattaaactcacataataagcagtgactgtgccagctgaat 311  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53489483 aaatattaattatgattaaactctccataaaaaaacattaaacatattaataaggattaaattaaactcacataataagcagtgactgtgccagctgaat 53489582  T
Q  312 ttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccagagccagaggttctgtctagagacagagtaag 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53489583 ttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccagagccagaggttctatctagagacagagtaag 53489682  T
Q  412 aagctgaccattgt 425  Q
    ||||||||||||||    
T  53489683 aagctgaccattgt 53489696  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 53492732 - 53492631
Alignment:
Q  66 ttgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtctatttcatcc 165  Q
    ||||||||||||||| |||||||||||| |  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53492732 ttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatttcatcc 53492633  T
Q  166 ca 167  Q
    ||    
T  53492632 ca 53492631  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 53499061 - 53498936
Alignment:
Q  42 agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttccc 141  Q
    |||||| |||||||| |  || ||||||||||||||||  |||||||||||| |  |||||||||| ||||  |||||||||||||||||||||||||||    
T  53499061 agttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttccc 53498962  T
Q  142 aagaattcaaagtctatttcatccca 167  Q
    |||||||||||||| || ||||||||    
T  53498961 aagaattcaaagtcaatctcatccca 53498936  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 414
Target Start/End: Complemental strand, 53492509 - 53492376
Alignment:
Q  281 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccag 380  Q
    |||||||| |||||||| |||||||| || || |||||||||||||||| |||||| ||||| || ||| |||| |||| ||| |||||||||||||| |    
T  53492509 acataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagcctg 53492410  T
Q  381 agccagaggttctgtctagagacagagtaagaag 414  Q
    | |||||||   | || ||||| |||||||||||    
T  53492409 aaccagaggacttatcaagagatagagtaagaag 53492376  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 414
Target Start/End: Complemental strand, 53498823 - 53498690
Alignment:
Q  281 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccag 380  Q
    |||||||| |||||||| |||||||| || ||||| |||||||| ||||| ||||| ||||| || ||| | |  |||| ||| |||||||||||||| |    
T  53498823 acataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagcctg 53498724  T
Q  381 agccagaggttctgtctagagacagagtaagaag 414  Q
    | ||||||| | |||| ||||| |||||||||||    
T  53498723 aaccagaggctttgtcaagagatagagtaagaag 53498690  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 53502192 - 53502074
Alignment:
Q  49 tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt 148  Q
    |||||||||| |||||||||||| || |||| ||||||||||||  || | ||||| || ||||  ||||| || |||||||| | |||||| |  ||||    
T  53502192 tcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcctagaaatt 53502093  T
Q  149 caaagtctatttcatccca 167  Q
    || ||||||| ||||||||    
T  53502092 catagtctatctcatccca 53502074  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 53495103 - 53494978
Alignment:
Q  42 agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttccc 141  Q
    ||||||||||||||||| || ||||||||| ||||| | |||||| |||||     |||||||||| ||||   |||| || || ||||||| ||| ||     
T  53495103 agttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccct 53495004  T
Q  142 aagaattcaaagtctatttcatccca 167  Q
    |||||||||||||| || ||||||||    
T  53495003 aagaattcaaagtcaatctcatccca 53494978  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 52590825 - 52590713
Alignment:
Q  52 aaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaa 151  Q
    ||||| |||||||||||||| ||| | | |||||| ||||| |  || |  || |||||||| || |||||||||||||| || || ||||| |||||||    
T  52590825 aaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggatcaccacttaagttacccaaaaattcaa 52590726  T
Q  152 agtctatttcatc 164  Q
    | |||||||||||    
T  52590725 aatctatttcatc 52590713  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 53494842 - 53494729
Alignment:
Q  276 aactcacataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaa 375  Q
    |||| ||||| ||||||||||| || || || || |||||||| ||||| || |  ||||| ||||| || ||| | ||||||| ||| |||||||||||    
T  53494842 aacttacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaa 53494743  T
Q  376 gccagagccagagg 389  Q
     ||||| |||||||    
T  53494742 tccagaaccagagg 53494729  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 37188696 - 37188571
Alignment:
Q  42 agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttccc 141  Q
    |||||| ||||||||||  |||||||||||||||||||  ||||| |||||| |  |||||||||| ||||  ||||| || ||||||||||| ||||||    
T  37188696 agttgggtcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttccc 37188597  T
Q  142 aagaattcaaagtctatttcatccca 167  Q
    |||||||||||||| |||||||||||    
T  37188596 aagaattcaaagtcaatttcatccca 37188571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 281 - 425
Target Start/End: Complemental strand, 37188471 - 37188327
Alignment:
Q  281 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccag 380  Q
    |||||||| |||||||| |||||||| || || ||||||||||||||||  ||||| ||||| || ||| |||| |||| ||| ||||||||||| ||||    
T  37188471 acataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccag 37188372  T
Q  381 agccagaggttctgtctagagacagagtaagaagctgaccattgt 425  Q
    ||||||||| | |||| ||||||| ||||||||| || |||||||    
T  37188371 agccagaggatttgtcaagagacaaagtaagaagttggccattgt 37188327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 16942245 - 16942130
Alignment:
Q  49 tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt 148  Q
    |||||||| |||||||||||||||||||| |  ||||| ||||| ||| | || || |||||||  || ||||||||||||||||| || || |  ||||    
T  16942245 tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt 16942146  T
Q  149 caaagtctatttcatc 164  Q
    ||||||||||||||||    
T  16942145 caaagtctatttcatc 16942130  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 17012910 - 17012795
Alignment:
Q  49 tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt 148  Q
    |||||||| |||||||||||||||||||| |  ||||| ||||| ||| | || || |||||||  || ||||||||||||||||| || || |  ||||    
T  17012910 tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt 17012811  T
Q  149 caaagtctatttcatc 164  Q
    ||||||||||||||||    
T  17012810 caaagtctatttcatc 17012795  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 38214693 - 38214833
Alignment:
Q  281 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccag 380  Q
    ||||| |||||||| || || ||||| |||||||||| ||||||||||| |||||| |||||  | ||| | | ||| |  || |||||||| |||||||    
T  38214693 acatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagccag 38214792  T
Q  381 agccagaggttctgtctagagacagagtaagaagctgacca 421  Q
    ||||||| ||| | || ||||| ||||  ||||| ||||||    
T  38214793 agccagaagttttatcaagagaaagagatagaagttgacca 38214833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 16286228 - 16286168
Alignment:
Q  281 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaa 341  Q
    |||||||| || ||||| || ||||| |||||||| ||||||||||| |||| ||||||||    
T  16286228 acataataggccgtgacggttccagcagaatttcccggaacaagtttgattttcatgtcaa 16286168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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