View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14596_low_1 (Length: 543)
Name: NF14596_low_1
Description: NF14596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14596_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 41785456 - 41784914
Alignment:
| Q |
1 |
tgtcttccattttcttcctcaacctttctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttg |
100 |
Q |
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| T |
41785456 |
tgtcttccattttcttcctcaacttttctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttg |
41785357 |
T |
|
| Q |
101 |
tttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttct |
200 |
Q |
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| T |
41785356 |
tttttgctccgcatttattcggtcaatggttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttct |
41785257 |
T |
|
| Q |
201 |
atctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgt |
300 |
Q |
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| T |
41785256 |
atctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgt |
41785157 |
T |
|
| Q |
301 |
cattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatagctcttcacctctttgtat |
400 |
Q |
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| T |
41785156 |
cattaacttcagcttttaaagccataatctcaattgaagctccattttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtat |
41785057 |
T |
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| Q |
401 |
cattgctgctttcagttcatggtttctatcctgcagggccttattttcattcatcagttgtttaatctcataatgtgtatctcttaactgctcttccaac |
500 |
Q |
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| T |
41785056 |
cattgctgctttcagttcatggtttctatcctgcagggccttattttcattcatcagttgtttaatctcataatttgtatctcttaactgctcttccaac |
41784957 |
T |
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| Q |
501 |
tcatttctctgattgatttgagtttccaattcgaggtccatgt |
543 |
Q |
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| T |
41784956 |
tcatttctctgattgatttgagtttccaattcgagttccatgt |
41784914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 28 - 362
Target Start/End: Complemental strand, 10834648 - 10834316
Alignment:
| Q |
28 |
ctgccaattcttccattttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaat |
127 |
Q |
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||||||||||||||||||||||||||| | || | |||||||| | | ||||| || ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
10834648 |
ctgccaattcttccattttcctttctgccagtcaccgattcaacctgaacttatttgacatgattatggtttgtttttggtccacatttatttggtcaat |
10834549 |
T |
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| Q |
128 |
tgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattcc |
227 |
Q |
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|||| || |||||| |||||||| ||||| |||||||||||||| || ||||||||| | ||| |||| | |||||| | |||||| ||||| | | |
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| T |
10834548 |
ggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaaactttgtggttaaattttccacctttgccaggctttcagcatactgc |
10834450 |
T |
|
| Q |
228 |
ttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatga |
327 |
Q |
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||||||||||||||||| ||| || |||||| ||||| |||| ||||| || || || |||| | |||||||||||||||||||||||||||||||| |
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| T |
10834449 |
ttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaatctagtcccatgtcattaacttcagcttttaaagccatga |
10834351 |
T |
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| Q |
328 |
tctccattgaagctccattttcatcgctatcgttt |
362 |
Q |
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||||||| |||||||||||||| |||||||||||| |
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| T |
10834350 |
tctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
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