View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14596_low_3 (Length: 296)
Name: NF14596_low_3
Description: NF14596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14596_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 64 - 281
Target Start/End: Original strand, 29580874 - 29581091
Alignment:
| Q |
64 |
caaagagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
163 |
Q |
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| T |
29580874 |
caaaaagatgcaaagaaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagca |
29580973 |
T |
|
| Q |
164 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactttcgaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29580974 |
tgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccgtttttcaacaaaaccaaggactttcgaa |
29581073 |
T |
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| Q |
264 |
ctgcttcgcgtgctagat |
281 |
Q |
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|||||||||||||||||| |
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| T |
29581074 |
ctgcttcgcgtgctagat |
29581091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 79 - 281
Target Start/End: Complemental strand, 29613084 - 29612882
Alignment:
| Q |
79 |
aaaaggctaaccaattgtgatctggccactagatccatacttagtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
178 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29613084 |
aaaaggctaaccaattgtaatctggccactagatccatacttcgtaaatgtccatcctccacattgatagccgatatcattagcatgagttccagcaaca |
29612985 |
T |
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| Q |
179 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactagtctcctttccgtttttcaacaaaaccaaggactttcgaactgcttcgcgtgcta |
278 |
Q |
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| T |
29612984 |
aggattctcttggcgttcttattcaatggtatgaaaggtttactaggctcctttccatttttcaacaaaaccaacgactttcgaactgcttcgcgtgcta |
29612885 |
T |
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| Q |
279 |
gat |
281 |
Q |
| |
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||| |
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| T |
29612884 |
gat |
29612882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 25127338 - 25127491
Alignment:
| Q |
128 |
gtccatcctccacattgatagccgatatcattagcatgagttccagcaacaaggattctcttggcgttcttattcaatggtatgaaaggtttactagtct |
227 |
Q |
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||||| |||||||||||| | || | || || |||||||||||| | |||||| |||||||| || ||||| |||||||| | ||||||| |||| | | |
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| T |
25127338 |
gtccaacctccacattgaaatccaagattatcagcatgagttccggtaacaagaattctcttagcattcttgttcaatggaagaaaaggttcactaatat |
25127437 |
T |
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| Q |
228 |
cctttccgtttttcaacaaaaccaaggactttcgaactgcttcgcgtgctagat |
281 |
Q |
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| T |
25127438 |
cttttccatttttcaacaaaaccaacgactttcgaactgcttcccgtgcaagat |
25127491 |
T |
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