View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14597_high_3 (Length: 217)
Name: NF14597_high_3
Description: NF14597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14597_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9396187 - 9395989
Alignment:
| Q |
1 |
accactacgatccatggcagcagattggtctcagcttccacgtgagcttctgcaattaatatcacaaaaacttaacagggaactttacctcattcgctct |
100 |
Q |
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| T |
9396187 |
accactacgatccatggcagcagattggtctcagcttccacgtgagcttctgcaactaatatcacaaaaacttaacagggaactttacctcattcgctct |
9396088 |
T |
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| Q |
101 |
cgttccgtctgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaactattcggt |
199 |
Q |
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| T |
9396087 |
cgttccgtctgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaactattcggt |
9395989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 9687635 - 9687528
Alignment:
| Q |
10 |
atccatggcagcagattggtctcagcttccacgtgagcttctgcaattaatatcacaaaaact---taacagggaactttacctcattcgctctcgttcc |
106 |
Q |
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|||||||| ||||||||||||||||||||| | || ||||||||| |||||||||||||||| ||||| ||||| || || |||||| ||||||| |
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| T |
9687635 |
atccatggaagcagattggtctcagcttccgagagaacttctgcaactaatatcacaaaaactcgacaacagtgaactctatcttcttcgctttcgttcc |
9687536 |
T |
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| Q |
107 |
gtctgttc |
114 |
Q |
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| T |
9687535 |
gtctgttc |
9687528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 2605917 - 2606101
Alignment:
| Q |
10 |
atccatggcagcagattggtctcagcttccacgtgagcttctgcaattaatatcacaaaaacttaacagggaactttacctcattcgctctcgttccgtc |
109 |
Q |
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|||||||| |||||| |||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2605917 |
atccatggtagcagaatggtctcagcttccacatgagtttctgcaactaatatcacaaaaactcaacagggaactttacctcattcgctctcgttccgtc |
2606016 |
T |
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| Q |
110 |
tgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaactatt |
195 |
Q |
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|||||||||||||||||||| || |||| ||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
2606017 |
tgttcttggtggcgatcttccat-tcaaacgactataaaaaaaactatatacccgtaaagtttggacaattctcttgccaactatt |
2606101 |
T |
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