View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14597_low_1 (Length: 459)

Name: NF14597_low_1
Description: NF14597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14597_low_1
NF14597_low_1
[»] chr6 (9 HSPs)
chr6 (67-450)||(10543131-10543514)
chr6 (17-66)||(10543666-10543715)
chr6 (366-454)||(6389707-6389795)
chr6 (364-398)||(22965912-22965946)
chr6 (364-398)||(23822447-23822481)
chr6 (366-399)||(12235526-12235559)
chr6 (366-399)||(34446584-34446617)
chr6 (366-434)||(6299496-6299564)
chr6 (366-434)||(6306306-6306374)
[»] chr4 (5 HSPs)
chr4 (369-456)||(7012029-7012115)
chr4 (366-450)||(24343475-24343559)
chr4 (320-359)||(3144584-3144623)
chr4 (365-399)||(31243554-31243588)
chr4 (367-399)||(20743286-20743318)
[»] chr5 (3 HSPs)
chr5 (366-450)||(26205767-26205851)
chr5 (367-450)||(19293431-19293514)
chr5 (366-456)||(21137651-21137741)
[»] chr7 (3 HSPs)
chr7 (383-456)||(19206012-19206085)
chr7 (366-456)||(4017801-4017891)
chr7 (367-399)||(23930238-23930270)
[»] chr1 (1 HSPs)
chr1 (325-450)||(398735-398856)
[»] chr3 (4 HSPs)
chr3 (352-399)||(20691338-20691385)
chr3 (367-449)||(25652039-25652121)
chr3 (366-399)||(1830362-1830395)
chr3 (366-450)||(24205048-24205132)
[»] chr2 (3 HSPs)
chr2 (366-443)||(24011012-24011088)
chr2 (366-442)||(10535766-10535842)
chr2 (366-398)||(11308011-11308043)
[»] scaffold0314 (1 HSPs)
scaffold0314 (374-414)||(8952-8992)
[»] chr8 (1 HSPs)
chr8 (323-399)||(34897104-34897180)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 67 - 450
Target Start/End: Complemental strand, 10543514 - 10543131
Alignment:
Q  67 aaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatggagacaaggtttggaaagttcatacgcagctttgttcttcctcacaatgct 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10543514 aaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatggagacaaggtttggaaagttcatacgcagctttgttcttcctcacaatgct 10543415  T
Q  167 attatgtgttctatttccgcttcttgtcgaaatggtgttcttagtgttattgttcttaaaaaactgcatcctcctggtcactttgacaagcctatgagaa 266  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  10543414 agtatgtcttctatttccgcttcttgtcgaaatggtgttcttagtgttattgttcttaaaaaactgcatcctcctgatcactttaacaagcctatgagaa 10543315  T
Q  267 ccattcaagtcaagaatggcttgaattgaaacccnnnnnnnnataatagtcgttatctatgaagcacggacacttctgagattaggtgtgtctgacattg 366  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |    
T  10543314 ccattcaagtcaagaatggcttgaattgaaacccttttttttataatagtcgttatctatgaagcacaaacacttctgagattaggtgtgtctgacaccg 10543215  T
Q  367 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 450  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  10543214 acacccatgattacgttgaattatgtcatttttagaaaattttatcgaagttggcgtgttggtgttcgtgtcgtgtctggtgtc 10543131  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10543715 - 10543666
Alignment:
Q  17 gaatcaacttctgattctgataatgttgttcaacctcttcctaaaatcat 66  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10543715 gaatcaacttctgattctgataatgttgttcaacctctttctaaaatcat 10543666  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 6389795 - 6389707
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtg 454  Q
    ||||||||||||||| || |||||| ||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||||||    
T  6389795 gacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtg 6389707  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 22965912 - 22965946
Alignment:
Q  364 ttgacacctatgattacgctgaattatgtcatttt 398  Q
    ||||||||||||||||||||||||||| |||||||    
T  22965912 ttgacacctatgattacgctgaattatatcatttt 22965946  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 23822481 - 23822447
Alignment:
Q  364 ttgacacctatgattacgctgaattatgtcatttt 398  Q
    ||||||||||||||||||||||||||| |||||||    
T  23822481 ttgacacctatgattacgctgaattatatcatttt 23822447  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Original strand, 12235526 - 12235559
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttc 399  Q
    ||||||||||||||| ||||||||||||||||||    
T  12235526 gacacctatgattacactgaattatgtcattttc 12235559  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 34446617 - 34446584
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttc 399  Q
    ||||||||||||||| ||||||||||||||||||    
T  34446617 gacacctatgattacactgaattatgtcattttc 34446584  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 6299564 - 6299496
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 434  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6299564 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6299496  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 6306374 - 6306306
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 434  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6306374 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6306306  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 456
Target Start/End: Complemental strand, 7012115 - 7012029
Alignment:
Q  369 acctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 456  Q
    ||||||||| || ||||||||||||||||||  ||| | ||||||  |||||||||| |||||||||||| ||||| |||||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtct-gtgtctgtgct 7012029  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 24343559 - 24343475
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 450  Q
    ||||||||| ||||| ||||||||||| ||||||  ||| | |||||   |||||||||| || |||||||||||||| ||||||    
T  24343559 gacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtc 24343475  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 3144584 - 3144623
Alignment:
Q  320 tatctatgaagcacggacacttctgagattaggtgtgtct 359  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  3144584 tatctatgaagcacggacacttctcggattaggtgtgtct 3144623  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 31243554 - 31243588
Alignment:
Q  365 tgacacctatgattacgctgaattatgtcattttc 399  Q
    |||||||||||||||| ||||||||||||||||||    
T  31243554 tgacacctatgattacactgaattatgtcattttc 31243588  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 20743286 - 20743318
Alignment:
Q  367 acacctatgattacgctgaattatgtcattttc 399  Q
    |||||||||||||| ||||||||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttc 20743318  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 450
Target Start/End: Original strand, 26205767 - 26205851
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 450  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||   ||| |||||  |||||| |||| |||| ||||||    
T  26205767 gacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtc 26205851  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 19293431 - 19293514
Alignment:
Q  367 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 450  Q
    |||| ||||||||| || |||||||| ||||||  ||| | |||| |  ||| ||||||||||||| |||||||||||||||||    
T  19293431 acacatatgattacacttaattatgttattttcttaaattattattggtgtcagcgtgttggtgtctgtgtcgtgtctggtgtc 19293514  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 456
Target Start/End: Complemental strand, 21137741 - 21137651
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 456  Q
    ||||||||||||| | |||||||| |||||||||  | | | ||| ||| ||||||||||  |||||||||| ||||| |||||| |||||    
T  21137741 gacacctatgatttcactgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgct 21137651  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 19206085 - 19206012
Alignment:
Q  383 tgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 456  Q
    |||||||||| ||||||  ||| | ||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtctggtatccgtgct 19206012  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 456
Target Start/End: Original strand, 4017801 - 4017891
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 456  Q
    ||||| ||||||||| || |||||| || |||||  ||| | |||||   |||||||||| |||||||||||||||||  |||||||||||    
T  4017801 gacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtccagtgtctgtgct 4017891  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 23930270 - 23930238
Alignment:
Q  367 acacctatgattacgctgaattatgtcattttc 399  Q
    |||||||||||||| ||||||||||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttc 23930238  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 450
Target Start/End: Original strand, 398735 - 398856
Alignment:
Q  325 atgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtg 424  Q
    ||||||||||||||||||| |||||||| |||||       ||||||||| ||||| ||||||||||| |||||   ||| | ||| ||  |||||||||    
T  398735 atgaagcacggacacttcttagattaggcgtgtcccg----gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtg 398830  T
Q  425 ttggtgtccgtgtcgtgtctggtgtc 450  Q
    |  |||||||||||||||| ||||||    
T  398831 tcagtgtccgtgtcgtgtccggtgtc 398856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 20691385 - 20691338
Alignment:
Q  352 gtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 399  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttc 20691338  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 25652039 - 25652121
Alignment:
Q  367 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgt 449  Q
    |||||||| | ||| ||||||||| ||||||||  ||| | |||||   || |||||||| ||||||||||||||||||||||    
T  25652039 acacctataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgt 25652121  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 1830395 - 1830362
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttc 399  Q
    ||||||||||||||| ||||||||||||||||||    
T  1830395 gacacctatgattacactgaattatgtcattttc 1830362  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 450
Target Start/End: Original strand, 24205048 - 24205132
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 450  Q
    ||||| ||| ||||| ||| ||||||||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||    
T  24205048 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 24205132  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 24011088 - 24011012
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtc 443  Q
    ||||||||||||||| || |||||||||||||||  ||| | ||||| | |||||||| |||||||  ||||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt-ttggtgtttgtgtcgtgtc 24011012  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 10535766 - 10535842
Alignment:
Q  366 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgt 442  Q
    ||||| ||||||||| ||||||||||||||||||  ||| | ||||||  |||||||| || || || |||||||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 11308011 - 11308043
Alignment:
Q  366 gacacctatgattacgctgaattatgtcatttt 398  Q
    ||||||||||||||| |||||||||||||||||    
T  11308011 gacacctatgattacactgaattatgtcatttt 11308043  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 8992 - 8952
Alignment:
Q  374 tgattacgctgaattatgtcattttcagaaaattttatcga 414  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  8992 tgattacgttgaattatgtcattttctcaaaattttatcga 8952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 34897180 - 34897104
Alignment:
Q  323 ctatgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 399  Q
    |||||||||||||||||| ||   ||||  |||||| ||||| ||||| ||| ||||| ||||||||||| ||||||    
T  34897180 ctatgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattacactgaattatgtgattttc 34897104  T

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