View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14597_low_2 (Length: 256)

Name: NF14597_low_2
Description: NF14597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14597_low_2
NF14597_low_2
[»] chr4 (4 HSPs)
chr4 (12-239)||(25952223-25952450)
chr4 (35-85)||(21592392-21592442)
chr4 (37-93)||(25319007-25319063)
chr4 (36-76)||(44845723-44845763)
[»] chr5 (2 HSPs)
chr5 (33-93)||(29922854-29922914)
chr5 (37-93)||(10898682-10898738)
[»] chr3 (2 HSPs)
chr3 (34-93)||(48089455-48089514)
chr3 (37-85)||(48411018-48411066)
[»] chr1 (2 HSPs)
chr1 (43-83)||(15477824-15477864)
chr1 (49-81)||(45660670-45660702)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 25952450 - 25952223
Alignment:
Q  12 caaaggcaacaattacaaacgttagcttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaacttatcttagtcattttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952450 caaaggcaacaattacaaacgttagcttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaacttatcttagtcattttta 25952351  T
Q  112 actcgtcaaatcaattttagctctcccaaaagcgaatgccaatatgcactaaagaaaaatttctatggcaggcacttttattgaccaaggcgagaaacct 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25952350 actcctcaaatcaattttagctctcccaaaagcgaatgccaatatgcactaaagaaaaatttctatggcaggcacttttattgaccaaggcgagaaacct 25952251  T
Q  212 gagttttatttccagaattaccctgaag 239  Q
    ||||||||||||||||||||||||||||    
T  25952250 gagttttatttccagaattaccctgaag 25952223  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 21592442 - 21592392
Alignment:
Q  35 agcttcaagttagaatcaattcttgagcaaaaattaattatactcgagaac 85  Q
    ||||||||||||||||||| || || | |||||| ||||||||||||||||    
T  21592442 agcttcaagttagaatcaactcctgcggaaaaatcaattatactcgagaac 21592392  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 25319063 - 25319007
Alignment:
Q  37 cttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaac 93  Q
    ||||||||||||||||||||| |||  ||||| |||| ||||||||| | |||||||    
T  25319063 cttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaac 25319007  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 44845763 - 44845723
Alignment:
Q  36 gcttcaagttagaatcaattcttgagcaaaaattaattata 76  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  44845763 gcttcaagttagaatcaattctggaggaaaaatcaattata 44845723  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 29922914 - 29922854
Alignment:
Q  33 ttagcttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaac 93  Q
    |||||||||||||| ||||||||||||||  ||||| |||| | ||||||||| |||||||    
T  29922914 ttagcttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaac 29922854  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 10898738 - 10898682
Alignment:
Q  37 cttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaac 93  Q
    ||||||||||||||||||||| |||  ||||| |||| ||||||||| | |||||||    
T  10898738 cttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaac 10898682  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 48089455 - 48089514
Alignment:
Q  34 tagcttcaagttagaatcaattcttgagcaaaaattaattatactcgagaaccaccaaac 93  Q
    |||||| | ||| |||||||||||||||  |||||||||||||||||||| | |||||||    
T  48089455 tagcttaaggtttgaatcaattcttgaggcaaaattaattatactcgagagcaaccaaac 48089514  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 48411066 - 48411018
Alignment:
Q  37 cttcaagttagaatcaattcttgagcaaaaattaattatactcgagaac 85  Q
    ||||||||||||||||||||| |||  |||||||| | |||||||||||    
T  48411066 cttcaagttagaatcaattctagaggcaaaattaaatctactcgagaac 48411018  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 15477824 - 15477864
Alignment:
Q  43 gttagaatcaattcttgagcaaaaattaattatactcgaga 83  Q
    ||||||||||||| | ||| |||||||||||||||||||||    
T  15477824 gttagaatcaattatggaggaaaaattaattatactcgaga 15477864  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 45660670 - 45660702
Alignment:
Q  49 atcaattcttgagcaaaaattaattatactcga 81  Q
    ||||||||||||| |||||||||||||||||||    
T  45660670 atcaattcttgaggaaaaattaattatactcga 45660702  T

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