View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14597_low_4 (Length: 230)
Name: NF14597_low_4
Description: NF14597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14597_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 7651865 - 7652006
Alignment:
| Q |
31 |
tcaacaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcctcaattcaaggacatgaacatgatgatgccaccaccaaatcaa |
130 |
Q |
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| T |
7651865 |
tcaacaacagcttcaacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacatgatgatgccaccaccaaatcaa |
7651964 |
T |
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| Q |
131 |
aatccaaatatgaaaggtgttaagttcaatttgcctaaagag |
172 |
Q |
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| T |
7651965 |
aatccaaatatgaaaggtgttaaggtcaatttgcctaaagag |
7652006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 7657269 - 7657407
Alignment:
| Q |
34 |
acaacagttgcaacaacttcagcagatgaaaggacttgaagatcttaaggggcctcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaat |
133 |
Q |
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| T |
7657269 |
acaacagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaat |
7657368 |
T |
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| Q |
134 |
ccaaatatgaaaggtgttaagttcaatttgcctaaagag |
172 |
Q |
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| T |
7657369 |
acaaatatgaaaggtgttaagttcaatttgcctgaagag |
7657407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7651847 - 7651884
Alignment:
| Q |
1 |
acaacaagagcagaatcctcaacaacagcttcaacaac |
38 |
Q |
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| T |
7651847 |
acaacaagagcagaatcctcaacaacagcttcaacaac |
7651884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 48539089 - 48539049
Alignment:
| Q |
26 |
cagcttcaacaacagttgcaacaacttcagcagatgaaagg |
66 |
Q |
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| T |
48539089 |
cagcttcaacaacagttacaacaacttcaacagatgaaagg |
48539049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 48573344 - 48573304
Alignment:
| Q |
26 |
cagcttcaacaacagttgcaacaacttcagcagatgaaagg |
66 |
Q |
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| T |
48573344 |
cagcttcaacaacagttacaacaacttcaacagatgaaagg |
48573304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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