View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14597_low_6 (Length: 213)
Name: NF14597_low_6
Description: NF14597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14597_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 12708946 - 12709126
Alignment:
| Q |
16 |
atatcaaatgtgtatgaaaa-aatatgctaaaagatgttaactctttaaatagatttttgttagtgagaaattgatcttcacacatgcgtccgagtaggc |
114 |
Q |
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| T |
12708946 |
atatcaaatgtgtatgaaaaaaatatgctaaaagatgttaactctttaaatagatctttgttagtgagaaattgatcttcacacatgcgtccgagtaggc |
12709045 |
T |
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| Q |
115 |
atggtaatgggcggggtaggaatgaaatttacattctccgtccccatatcatattctcaagtacttatcgggtaccctacc |
195 |
Q |
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| T |
12709046 |
atggtaatgggcggggtaggaatggaatttacattctccgtccccatatcatattctcaagtacttaccgggtaccctacc |
12709126 |
T |
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Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 12770197 - 12770377
Alignment:
| Q |
16 |
atatcaaatgtgtatgaaaa-aatatgctaaaagatgttaactctttaaatagatttttgttagtgagaaattgatcttcacacatgcgtccgagtaggc |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12770197 |
atatcaaatgtgtatgaaaaaaatatgctaaaagatgttaactctttaaatagatctttgttagtgagaaattgatcttcacacatgcgtccgagtaggc |
12770296 |
T |
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| Q |
115 |
atggtaatgggcggggtaggaatgaaatttacattctccgtccccatatcatattctcaagtacttatcgggtaccctacc |
195 |
Q |
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| T |
12770297 |
atggtaatgggcggggtaggaatggaatttacattctccgtccccatatcatattctcaagtacttaccgggtaccctacc |
12770377 |
T |
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