View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14598_low_1 (Length: 376)
Name: NF14598_low_1
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 38830712 - 38831059
Alignment:
| Q |
9 |
agcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38830712 |
agcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttc |
38830811 |
T |
|
| Q |
109 |
ttaacacgaggatatagggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaatacattgttaaatcgtggttgct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38830812 |
ttaacacgaggatatagggctatccttaacttctctgagcatgttgtgaaggagtctcttcaaaacatgaattttaagacattgttaaatcaaggttgct |
38830911 |
T |
|
| Q |
209 |
cacctttattggaactaaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcattgtgttgaacaa |
308 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38830912 |
cacctttattagaactaaaaaggatgcatgtgttgagaacaaggtctaagaaccctagtaaaaagggaaaaagggattccaagagcatggtgttgaacaa |
38831011 |
T |
|
| Q |
309 |
tgctcaaaatgtgttggtgttggaagatttgggttctgaatatctaga |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831012 |
tgctcaaaatgtgttggtgttggaagatttgggttctgaatatctaga |
38831059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 38862437 - 38862531
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagcttt |
107 |
Q |
| |
|
|||||||| || |||||||||| |||||| | ||||||||||||||||| || || || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38862437 |
gagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagcttt |
38862531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 30623979 - 30623874
Alignment:
| Q |
16 |
ataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacac |
115 |
Q |
| |
|
||||| ||| |||||||||| |||||| | || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
30623979 |
ataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctgctttagcttatgatcaagcagctttatcaacaa |
30623880 |
T |
|
| Q |
116 |
gaggat |
121 |
Q |
| |
|
|||||| |
|
|
| T |
30623879 |
gaggat |
30623874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 30629610 - 30629505
Alignment:
| Q |
16 |
ataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctttcttaacac |
115 |
Q |
| |
|
||||| ||| |||| |||||||||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||| |
|
|
| T |
30629610 |
ataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagcttatgatcaagcagctttatcaacaa |
30629511 |
T |
|
| Q |
116 |
gaggat |
121 |
Q |
| |
|
|||||| |
|
|
| T |
30629510 |
gaggat |
30629505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 30629298 - 30629260
Alignment:
| Q |
313 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30629298 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
30629260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 30623667 - 30623629
Alignment:
| Q |
313 |
caaaatgtgttggtgttggaagatttgggttctgaatat |
351 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30623667 |
caaaatgtgttggtgttggaagatttaggttctgaatat |
30623629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30689781 - 30689733
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
101 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
30689781 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30689733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 30718824 - 30718776
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatgaccaagc |
101 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
30718824 |
ttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagc |
30718776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 19720022 - 19719928
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagcttt |
107 |
Q |
| |
|
|||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
19720022 |
gagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagctgcttt |
19719928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 19840571 - 19840664
Alignment:
| Q |
13 |
gagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatgaccaagcagctt |
106 |
Q |
| |
|
|||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| |||||||| |||| |
|
|
| T |
19840571 |
gagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgctt |
19840664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 4420197 - 4420155
Alignment:
| Q |
53 |
ttggaacatttgatacagctgaagcagctgctttagcttatga |
95 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4420197 |
ttggtacatttgatacagctgaacaagctgctttagcttatga |
4420155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University