View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14598_low_10 (Length: 208)
Name: NF14598_low_10
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_10 |
 | |
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| [»] chr6 (1 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
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| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 12438236 - 12438437
Alignment:
| Q |
7 |
agtacaacaactgagccagaggaaattccataccaaattcggcgaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12438236 |
agtacaacaactgagccagaggaaattccataccaacttcggcgaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaatt |
12438335 |
T |
|
| Q |
107 |
agaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattc |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12438336 |
agaccctttgtaatcaattggacaatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattc |
12438435 |
T |
|
| Q |
207 |
ac |
208 |
Q |
| |
|
|| |
|
|
| T |
12438436 |
ac |
12438437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 41654759 - 41654614
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||| |||||||||||| || ||||||||| | ||| | || ||||| |||| ||||||||||| |
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|
| T |
41654759 |
ggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaatcaattgaagaatccaagaacctctctggataaaacttttctc |
41654660 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcattcac |
208 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41654659 |
cttcaatccaatacttttggtctcttccaattgcccatgcattcac |
41654614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 41647224 - 41647079
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||||| |||||||||||| || ||| ||||||| ||| | || ||||| |||| ||||||||||| |
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|
| T |
41647224 |
ggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaattaattggagaatccaagaacctctctggataaaacttttctc |
41647125 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcattcac |
208 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
41647124 |
cttcaatccaatatttttcgtctcttccaattgcccatgaattcac |
41647079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 41620752 - 41620909
Alignment:
| Q |
51 |
aacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggat |
150 |
Q |
| |
|
||||| ||||| ||||||||||| |||| ||||||||||||| || || ||||| || |||||||||||||||||| ||| | || ||||| |||| |
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|
| T |
41620752 |
aacaaaatgccaggacacattctctttcctgcaccaaaaggtaagaaatcaaaattggatcctttgtaatcaattggagaatccaagaacctctctggat |
41620851 |
T |
|
| Q |
151 |
taaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcac |
208 |
Q |
| |
|
|||||| ||||| ||| |||||| ||| |||||||| |||||||||||| |||||| |
|
|
| T |
41620852 |
aaaacttgtctccatcactccaatttttttggtctcttgcaattgcccatgtattcac |
41620909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 205
Target Start/End: Complemental strand, 41465965 - 41465811
Alignment:
| Q |
51 |
aacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggat |
150 |
Q |
| |
|
||||| || |||||||| ||||| || |||||||| || ||||| | || | |||||| ||||| |||||||||| || || | ||||||||| ||| |
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|
| T |
41465965 |
aacaaaataccgggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaa |
41465866 |
T |
|
| Q |
151 |
taaacttttctccttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
41465865 |
taaacttttccggttcactccaatactttggatctcttccaatcgcccatgcatt |
41465811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 7154551 - 7154484
Alignment:
| Q |
57 |
atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaat |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||| ||||||| |
|
|
| T |
7154551 |
atgcctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaat |
7154484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 41329183 - 41329041
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || ||||| | | |||||| |||||||||||| || || ||| |||||||| ||||| | || |
|
|
| T |
41329183 |
ggacacatccttcttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattggactattaacaaacctctcaggtttaaaactctcag |
41329084 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
||||| ||||||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
41329083 |
cttcaacccaataccttgaatctcttccaatagcccaagcatt |
41329041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 41317142 - 41317000
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| || ||||| | | |||||| |||||||||| | || || ||| |||||||| ||||| | || |
|
|
| T |
41317142 |
ggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcag |
41317043 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
41317042 |
cttcaacccaataccttggatctcttccaatagcccaagcatt |
41317000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 2433694 - 2433549
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| |||| |||||||||||||||||||||| | ||| ||| || || |||||||||| ||||||||||| |
|
|
| T |
2433694 |
ggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctc |
2433595 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcattcac |
208 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
2433594 |
cttccctccaatacttttggtctcttcctattgcccatccattcac |
2433549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 22971933 - 22972081
Alignment:
| Q |
57 |
atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact |
156 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || || |||| ||||| | |||||| |||||| | || |||||||||||| ||||||| ||||| |
|
|
| T |
22971933 |
atgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaact |
22972032 |
T |
|
| Q |
157 |
tttctccttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
| ||| ||| ||||||| ||||| || |||||||||||||| ||||| |
|
|
| T |
22972033 |
tatctggatcagtccaatattttggatcccttccaattgcccaagcatt |
22972081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 22946385 - 22946534
Alignment:
| Q |
56 |
gatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaac |
155 |
Q |
| |
|
|||||| ||||| ||||| ||||| |||||||| || || |||| ||||| | |||||| |||||| | || |||||||||||| ||||||| |||| |
|
|
| T |
22946385 |
gatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaac |
22946484 |
T |
|
| Q |
156 |
ttttctccttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
|| ||| ||| ||||||| ||||| || |||||||||||||| ||||| |
|
|
| T |
22946485 |
ttatctggatcagtccaatattttggatcccttccaattgcccaagcatt |
22946534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 22986259 - 22986359
Alignment:
| Q |
57 |
atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact |
156 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| || || |||| ||||||| |||||| ||||||| | || ||||||||| |||||||||| ||||| |
|
|
| T |
22986259 |
atgccaggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaact |
22986358 |
T |
|
| Q |
157 |
t |
157 |
Q |
| |
|
| |
|
|
| T |
22986359 |
t |
22986359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 22906286 - 22906398
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||||| |||| ||||||||||||| || || |||||| ||||| ||||||| ||| || ||| |
|
|
| T |
22906286 |
ggacatatccttctcccagcaccaaatggtataaactcaaaatccacacctttgtaatcaactgaacaatcaattaatctttcaggataaaatttctctg |
22906385 |
T |
|
| Q |
163 |
cttcattccaata |
175 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
22906386 |
cttcaatccaata |
22906398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 22941586 - 22941542
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| |||||| |
|
|
| T |
22941586 |
ggacacattcttcttccagcaccaaatggaatgaactcaaaatta |
22941542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 12609893 - 12610035
Alignment:
| Q |
63 |
ggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctc |
162 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||| |||||| ||||||||| ||||| | | | | || |||||||| |||| |||||| ||| |
|
|
| T |
12609893 |
ggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctg |
12609992 |
T |
|
| Q |
163 |
cttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
12609993 |
gttcagtccagtactttggatctcttccaatcgcccatgcatt |
12610035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 15885968 - 15885832
Alignment:
| Q |
69 |
attcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcat |
168 |
Q |
| |
|
||||||||||||| ||||||||| || |||| |||||| |||||| || ||||| | | | |||| |||||||| |||| |||| | ||| |||| |
|
|
| T |
15885968 |
attcttcttccagaaccaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcag |
15885869 |
T |
|
| Q |
169 |
tccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
15885868 |
tccaatactttggatctcttccaatcgcccatgcatt |
15885832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 12636982 - 12637131
Alignment:
| Q |
56 |
gatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaac |
155 |
Q |
| |
|
|||||| || || ||||||||||| ||||||||||| || |||| |||||| |||||||| ||||| | | | |||| |||||||| |||| |||| |
|
|
| T |
12636982 |
gatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac |
12637081 |
T |
|
| Q |
156 |
ttttctccttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
| ||| |||| |||| |||||||| ||||| ||||||| ||||||||| |
|
|
| T |
12637082 |
ctctctggttcagtccagtactttggatctctaccaattgtccatgcatt |
12637131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 62147 - 62283
Alignment:
| Q |
69 |
attcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaacttttctccttcat |
168 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||| ||| ||||| ||||| | || | |||| |||||||| |||| |||| | ||| ||| |
|
|
| T |
62147 |
attctttttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccg |
62246 |
T |
|
| Q |
169 |
tccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
|||| ||| |||| |||||||| |||||||||||||| |
|
|
| T |
62247 |
tccagtaccttggatctcttccgattgcccatgcatt |
62283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 23610199 - 23610347
Alignment:
| Q |
57 |
atgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacgatcaataaatctctcaggattaaact |
156 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| || || ||||| ||||||| ||| | ||||||| | | ||||||||| || ||||||| ||||| |
|
|
| T |
23610199 |
atgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaact |
23610298 |
T |
|
| Q |
157 |
tttctccttcattccaatactttgggtctcttccaattgcccatgcatt |
205 |
Q |
| |
|
| ||| ||||||||||| || || || ||||| |||||||| ||||| |
|
|
| T |
23610299 |
tatctgggtcattccaatatttaggatcccttcctattgcccaagcatt |
23610347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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