View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14598_low_11 (Length: 207)
Name: NF14598_low_11
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 36656212 - 36656380
Alignment:
| Q |
19 |
cagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36656212 |
cagagattcctaattcctcgaggaaggtattatgggagcaaacatagtctaaaacatttttaagaagttgaggctcaatctcacctcgacggtcaagatc |
36656311 |
T |
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| Q |
119 |
aaaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattctc |
186 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36656312 |
aaaagcctgcattgcagttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattctc |
36656380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 36636738 - 36636885
Alignment:
| Q |
19 |
cagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatc |
118 |
Q |
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||||||||||||| |||| |||| ||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| | ||| |||||||||||| |
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| T |
36636738 |
cagagattcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatc |
36636837 |
T |
|
| Q |
119 |
aaaagcttgcattg-agttgaggtatctcgaagagtcaatatcttaga |
165 |
Q |
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|| ||| |||| || |||||||||||| |||||||||||||| ||||| |
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| T |
36636838 |
aagagcgtgcagtgcagttgaggtatcacgaagagtcaatatgttaga |
36636885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 36643434 - 36643600
Alignment:
| Q |
20 |
agagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatca |
119 |
Q |
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||||||||||||||| | |||| ||||||||||||||||| ||| | ||||| |||||||| |||||||| ||||| ||||| | ||| ||||||| |
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| T |
36643434 |
agagattcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattg |
36643533 |
T |
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| Q |
120 |
aaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattct |
185 |
Q |
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| |||||||| | ||||||| ||| ||||||||||| || ||||| ||||||||| |||| |||| |
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| T |
36643534 |
agagcttgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttct |
36643600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 35968579 - 35968443
Alignment:
| Q |
45 |
gtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatcaaaagcttgcattg-agttgaggtat |
143 |
Q |
| |
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||||||| ||| |||||||||| |||||| |||| ||| ||||||| |||||| | ||| |||||||| ||||| |||||||| || | ||||||||| |
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| T |
35968579 |
gtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtat |
35968480 |
T |
|
| Q |
144 |
ctcgaagagtcaatatcttagaaacgaatatgtcaaa |
180 |
Q |
| |
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| ||||||||||| |||||||| ||||| ||| |||| |
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| T |
35968479 |
cacgaagagtcaaaatcttagacacgaacatggcaaa |
35968443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 36909838 - 36909737
Alignment:
| Q |
19 |
cagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatc |
118 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||||| |
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| T |
36909838 |
cagagattcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggctcaatatcaccacggcggtcaagatc |
36909739 |
T |
|
| Q |
119 |
aa |
120 |
Q |
| |
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|| |
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|
| T |
36909738 |
aa |
36909737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 42602676 - 42602832
Alignment:
| Q |
20 |
agagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatca |
119 |
Q |
| |
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|||||||||||||| | |||| |||||||||||| ||||| ||| || ||| |||||||| ||||| |||||||| ||| ||||| ||||||| |
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| T |
42602676 |
agagattcctaattgttggaggtgggtattatgggaataaacacagtctagaacctttttaaggagttgcggctcaatactaccatgacggtgaagatca |
42602775 |
T |
|
| Q |
120 |
aaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatg |
175 |
Q |
| |
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| ||| |||| || |||||||||||| ||||||||||| |||||||| || |||||| |
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| T |
42602776 |
agagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatg |
42602832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 19658159 - 19658280
Alignment:
| Q |
44 |
ggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatcaaaagcttgcattg-agttgaggta |
142 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||| | | |||||||||| | ||| |||||||||||||| || |||| || | |||||||| |
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| T |
19658159 |
ggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggta |
19658258 |
T |
|
| Q |
143 |
tctcgaagagtcaatatcttag |
164 |
Q |
| |
|
|| ||||||||||| ||||||| |
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| T |
19658259 |
tcacgaagagtcaaaatcttag |
19658280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 19674998 - 19675119
Alignment:
| Q |
44 |
ggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatcaaaagcttgcattg-agttgaggta |
142 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||| | | |||||||||| | ||| |||||||||||||| || |||| || | |||||||| |
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| T |
19674998 |
ggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggta |
19675097 |
T |
|
| Q |
143 |
tctcgaagagtcaatatcttag |
164 |
Q |
| |
|
|| ||||||||||| ||||||| |
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|
| T |
19675098 |
tcacgaagagtcaaaatcttag |
19675119 |
T |
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