View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14598_low_13 (Length: 201)
Name: NF14598_low_13
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 4157783 - 4157944
Alignment:
| Q |
21 |
tcatatatagttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacgtatgtaag |
120 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4157783 |
tcatatatagttcaaaacattatctgcactttttattaaacaatataggtgtaatatatcataaggtctgttaaaagaactcatgttatacgtatgtaag |
4157882 |
T |
|
| Q |
121 |
ttaatttgtttaatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatat |
182 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4157883 |
ttaatttgtttaatagaaattagctttttgctatcagtatgttttctttgaaatgagcatat |
4157944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 21981223 - 21981061
Alignment:
| Q |
21 |
tcatatatagttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacgtatgtaag |
120 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21981223 |
tcatagatagttcaaaacattacctgcactttttattaaaaaatataggtgtaatataacataaggtctgttaaaagaactcatgttatacgtatgtaag |
21981124 |
T |
|
| Q |
121 |
ttaatttgtttaatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatata |
183 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
21981123 |
ttaatttgtttagtagaaaaaagtttttcgctatcaatatgttttgtttaaaatgagcatata |
21981061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 3006694 - 3006525
Alignment:
| Q |
14 |
gcacagatcatatatagttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacgt |
113 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
3006694 |
gcacaggtcatatatagtacaaaacattacctgcactttttattaaaaaatataggtgcgatatatcataaggtctgttaaaataactcatattatacgt |
3006595 |
T |
|
| Q |
114 |
atgtaagttaatttgtttaatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatata |
183 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||| || ||||||||| ||||||||||||||||| |
|
|
| T |
3006594 |
atgtatgttaatttgtttatgagaaataagctttccgctctctgtatgttttgtttgaaatgagcatata |
3006525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 23408227 - 23408380
Alignment:
| Q |
29 |
agttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacgtatgtaagttaatttg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
23408227 |
agttcaaaacattacctacactttttattaaaaaatataggtgcgatatatcataaggtccgttaaaagaactcatattatacgtatgtatgttaatttg |
23408326 |
T |
|
| Q |
129 |
tttaatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatat |
182 |
Q |
| |
|
|||| |||| | ||||||| || ||| |||||||| | |||||||| ||||| |
|
|
| T |
23408327 |
tttagtagatgttagcttttacctgtcactatgttttgtatgaaatgatcatat |
23408380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 27475599 - 27475510
Alignment:
| Q |
20 |
atcatatatagttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttata |
110 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| | ||||||| ||| | ||| || ||||||||||||| |
|
|
| T |
27475599 |
atcatatataattctaaacattacctgcactttttattaaa-aatataggtgtgaaatatcatgtggtcttttataaaaactcatgttata |
27475510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 16399035 - 16398987
Alignment:
| Q |
23 |
atatatagttcaaaacattacctacactttttattaaacaatataggtg |
71 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
16399035 |
atatatagttctaaacattacctaccttttttattaaaaactataggtg |
16398987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 36608740 - 36608577
Alignment:
| Q |
21 |
tcatatatagttcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaa-agaactcatgttatacgtatgtaa |
119 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||| ||| ||| || |||||| |||||||| || || | || |||||||||||||||||| |
|
|
| T |
36608740 |
tcatatatagctcaaaactgtacctgcactttttattaaaaaatgtagatgcaatataccataaggtctgatacgtataattcatgttatacgtatgtat |
36608641 |
T |
|
| Q |
120 |
gttaatttgtttaatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatata |
183 |
Q |
| |
|
||||||||| || ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
36608640 |
gttaatttgctttgtagaactaagcttttctctatcagtatgttttgtttgaaatgagcatata |
36608577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 13600923 - 13601073
Alignment:
| Q |
32 |
tcaaaacattacctacactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacgtatgtaagttaatttgttt |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
13600923 |
tcaaaacattacctgcactttttattaaaaaatataggtgcgatagatcataaggtccattaaaagaactcatgttatatgtatgtatgttaatttgttt |
13601022 |
T |
|
| Q |
132 |
aatagaaataagcttttcgctatcagtatgttttctttgaaatgagcatat |
182 |
Q |
| |
|
| || | | ||||||| || ||| |||||||| | |||||||||||||| |
|
|
| T |
13601023 |
agtaaatgttagcttttacctgtcactatgttttgtatgaaatgagcatat |
13601073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 40966426 - 40966378
Alignment:
| Q |
21 |
tcatatatagttcaaaacattacctacactttttattaaacaatatagg |
69 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
40966426 |
tcatatatagttcaaaacattacctgcactttttattaaaaaatgtagg |
40966378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 5564945 - 5564830
Alignment:
| Q |
47 |
cactttttattaaacaatataggtgtaatatatcataaggtatgttaaaagaactcatgttatacg--tatgtaagttaatttgtttaatagaaataagc |
144 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||| ||| | | ||||||||||||| | ||| || | ||| ||||||| || |||||||| |
|
|
| T |
5564945 |
cactttttattaaaaaatataggtgcgaaatatcataaggcttgtctacaaaactcatgttatatgtatatatacgataacttgtttagtataaataagc |
5564846 |
T |
|
| Q |
145 |
ttttcgctatcagtat |
160 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5564845 |
ttttacctatcagtat |
5564830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University