View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14598_low_2 (Length: 365)
Name: NF14598_low_2
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 6813913 - 6813575
Alignment:
| Q |
1 |
taatggtcaaatttttagattacttaatttagtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatat |
100 |
Q |
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| T |
6813913 |
taatggtcaaatttttagattactta-----gtgaatttaatccttacatacccttcttacttcctccaagcttacatcaaagcataaatttgtgaatat |
6813819 |
T |
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| Q |
101 |
ggaaacaatagaatagtattcatagtgactactagctctctctcnnnnnnnnnnnn--------ggtaggtactcataaacaaggaatataactaattaa |
192 |
Q |
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| T |
6813818 |
ggaaacaatagaatagtattcatagtgactactagctctctctctctctatatatatatatataggtaggtactcataaacaaggaatataactaattaa |
6813719 |
T |
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| Q |
193 |
gctcttcaatcactctctnnnnnnnnnnnnnnnntgttctaaccattgcaaagcttggttagctagctcttaaaatggctgagattgaacttgaaagttt |
292 |
Q |
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| T |
6813718 |
gctcttcaatcactctc------acacacacacatgttctaaccattgcaaagcttggttagctagctcttaaaatggctgagattgaacttgaaagttt |
6813625 |
T |
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| Q |
293 |
gtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
342 |
Q |
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| T |
6813624 |
gtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
6813575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 6834722 - 6834607
Alignment:
| Q |
227 |
tgttctaaccattgcaaagcttggttagctagctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaa |
326 |
Q |
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| T |
6834722 |
tgttctaaccattctaaagcttggttagctagctcttaaaatggctgaagttgagtttgaaagtttgtttaatcatgccatgagagggcaatggagagaa |
6834623 |
T |
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| Q |
327 |
gttatagagtcatatg |
342 |
Q |
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||| |||||||||||| |
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| T |
6834622 |
gttttagagtcatatg |
6834607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 6820224 - 6820131
Alignment:
| Q |
249 |
ggttagctagctcttaaaatggctgagattgaacttgaaagtttgtttaatcatgccattagagggcaatggagagaagttatagagtcatatg |
342 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
6820224 |
ggttggctagctcttaaaatggctgaaattgagtttgaaagtttgtttaatcatgcaatgagagggcaatggagagaagttttagagtcatatg |
6820131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 6820423 - 6820330
Alignment:
| Q |
38 |
ttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaatagtattcatagtgacta |
131 |
Q |
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| T |
6820423 |
ttaatccttacacattctttttacttccgacaagcttacttcaacacattcttttgtgaatatggaaacaataaaataatatgcaaagtgacta |
6820330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 6834889 - 6834807
Alignment:
| Q |
31 |
agtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaata |
115 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| |||| ||||| ||| ||||||| |||||||||||| |||| |
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| T |
6834889 |
agtgaatttaatccttacatattctttttacttcctccaagtttacttcaacatatacttttgtga--atggaaacaataaaata |
6834807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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