View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14598_low_5 (Length: 284)
Name: NF14598_low_5
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 14426443 - 14426694
Alignment:
| Q |
17 |
acttatcaatcatcctagcaatagactgtgctggaacttggttccatatagtgtagtttttctttctcatcctgcaacaataaagaataaagtaaaaggg |
116 |
Q |
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| T |
14426443 |
acttatcaatcatcctagcaacagactctgctggaacttggttccatatagcgtagtttttctttctcatcctgcaacaaaaaagaataaagtaaaaggg |
14426542 |
T |
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| Q |
117 |
ataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatgtatcaatctctacgtatgtgtatagataac |
215 |
Q |
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| T |
14426543 |
ataaaattgtaaatataatagtttaaatgatagatac-------aatggaaaaaatactccaagatcatgtatcaatctctatgtatgtgtatcgataac |
14426635 |
T |
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| Q |
216 |
acaaaattgaagcctctcaagtatgaggtttggacagtcactcctcccgtctctgctcc |
274 |
Q |
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| T |
14426636 |
acaaaattgaagcctctcaagtatgaggtttggacagtcactcctcccgtctgtgctcc |
14426694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 34771122 - 34771215
Alignment:
| Q |
97 |
taaagaataaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatgtatc |
189 |
Q |
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| T |
34771122 |
taaataataaagtaaaagggatacatttgtaaatgtaatagtttaaatgaaggataaaattggaagtgaaaaagtcactccaaaatcatgtatc |
34771215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 39361096 - 39361062
Alignment:
| Q |
49 |
ggaacttggttccatatagtgtagtttttctttct |
83 |
Q |
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| T |
39361096 |
ggaacttggttccatatagcgtagtttttctttct |
39361062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 16423058 - 16423143
Alignment:
| Q |
105 |
aaagtaaaagggataaaattg-aaatgtaatagtttaaatgatagatacaatggaaaatggaaaaattactccaagatcatgtatc |
189 |
Q |
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| T |
16423058 |
aaagtgaatgggataaaattgtaaatgtaatagtttaaatgaaaaataaaattggaagtgaaaaaactactccaaaatcatgtatc |
16423143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 50647115 - 50647163
Alignment:
| Q |
97 |
taaagaataaagtaaaagggataaaattgaaatgtaatagtttaaatga |
145 |
Q |
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| T |
50647115 |
taaataataaagtaaatgggataaaattgaaacgtcatagtttaaatga |
50647163 |
T |
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