View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14598_low_6 (Length: 278)
Name: NF14598_low_6
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_6 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36425752 - 36426014
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425752 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
36425851 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36425852 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtcgagatgggtc |
36425951 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425952 |
aggtggatgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
36426014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36411586 - 36411848
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
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||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
36411586 |
tttcaaacattcatgtgggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaaca |
36411685 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtc |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36411686 |
gtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggtt |
36411785 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
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|| || ||||||||||| | |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
36411786 |
gggaggatgtgtaagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagt |
36411848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36416917 - 36417179
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
36416917 |
tttcaaacattcatgtgggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggaccaaaca |
36417016 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36417017 |
gtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggtt |
36417116 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
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|| || ||||||||||| | |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
36417117 |
gggaggatgtgtaagaaaaagaggtgcatctgtttgtgggaatggagaagggtttaacaaagt |
36417179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36368981 - 36369243
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| | |
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| T |
36368981 |
tttcaaacattcatgtgggacagtcaaaagagccaatggaaccggtactggtctgaaccaacagaccaatgtgataactatggaacctgtggatcaaaca |
36369080 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaa-ccaaaatttccacgagattggtatgagagtagagatgggt |
214 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||||||||| |
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| T |
36369081 |
gtaattgtgacctttttaactttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattggtatgaga-tagagatgggt |
36369179 |
T |
|
| Q |
215 |
caggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
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| || || |||||||| |||||||||| ||| |||||||| ||||||||||||||| ||||||| |
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| T |
36369180 |
cgggagggtgtgtaaggaagaaaggtgtatcggtttgtgggaatggagaagggtttgtcaaagt |
36369243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 36397340 - 36397601
Alignment:
| Q |
17 |
ttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaatag |
116 |
Q |
| |
|
|||||| |||||| ||| ||| ||||||||| ||||||| | ||| |||||| ||||||||| ||||||||| |||||| ||||| ||||||||||| || |
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| T |
36397340 |
ttcaaatattcacttggaacaatcaaaagagtcaatggaacaggttctggtcagaaccaacaaaccaatgtgataactatggaacgtgtggatcaaacag |
36397439 |
T |
|
| Q |
117 |
taattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtca |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
36397440 |
taattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggtatgagagtagagatgggtcg |
36397539 |
T |
|
| Q |
217 |
ggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
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|| || |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
36397540 |
ggagggtgtgtaaggaagaaaggtgcatctgtctgtgggaatggcgaagggtttatcaaagt |
36397601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36404272 - 36404534
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
| |
|
||||||| ||||||||||| | | |||||| ||||||| ||||| || || ||||||||||||||||||| |||||| ||||||||||||||||| | |
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|
| T |
36404272 |
tttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacatgtggatcaaaca |
36404371 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtc |
215 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36404372 |
gtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagagtagagatgggtc |
36404471 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
|
|| || |||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
36404472 |
gggagggtgtgtaaggaagaaaggtgcatctatttgtgggaatggagaagggtttataaaagt |
36404534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 36373600 - 36373862
Alignment:
| Q |
16 |
tttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaata |
115 |
Q |
| |
|
||||||| |||||| ||| ||| |||||| || ||||||| | ||| |||||||||||||||| ||||||||| |||||| ||||| ||||||||||| | |
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|
| T |
36373600 |
tttcaaatattcacttggaacaatcaaaaaagtcaatggaacaggttctggtctgaaccaacaaaccaatgtgataactatggaacctgtggatcaaaca |
36373699 |
T |
|
| Q |
116 |
gtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtagagatgggtc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
|
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| T |
36373700 |
gtaactgtgaccctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacgtgattggtatgagagaagagatgggtc |
36373799 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
|
||| || |||||||| |||||||| |||||| ||||| | ||||||||||||||||||||||| |
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|
| T |
36373800 |
aggagggtgtgtaaggaagaaaggcgcatctatttgtcggaatggagaagggtttatcaaagt |
36373862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 36387560 - 36387822
Alignment:
| Q |
17 |
ttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaactacggaacatgtggatcaaatag |
116 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||| | ||| |||||| |||||| |||||||||||||||||| | |
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|
| T |
36387560 |
ttcaaacattcaggtgggacagtcaaacgggccaatggagccggtgctggtctgaaccatctgacgaatgtggtaactatggaacatgtggatcaaatgg |
36387659 |
T |
|
| Q |
117 |
taattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattggtatgagagtag-agatgggtc |
215 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||| ||| ||||||| | |
|
|
| T |
36387660 |
taattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgtgattggtatcagaatagaagatgggac |
36387759 |
T |
|
| Q |
216 |
aggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggtttatcaaagt |
278 |
Q |
| |
|
|| || |||||||| |||||||| | |||||||||| ||||||||||||||||||||||| |
|
|
| T |
36387760 |
gggagggtgtgtaaggaagaaaggctcgtctgtttgtgagaatggagaagggtttatcaaagt |
36387822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 36433664 - 36433869
Alignment:
| Q |
71 |
aaccaacagaccaatgtgctaactacggaacatgtggatcaaatagtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggttt |
170 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||||||||| | |||| || ||| ||||||||| |||||| |
|
|
| T |
36433664 |
aaccaacaaaccaatgtgataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttt |
36433763 |
T |
|
| Q |
171 |
cgaaccaaaatttccacgagattggtatgagagtagagatgggtcaggtggctgtgtaagaaagaaaggtgcatctgtttgtggaaatggagaagggttt |
270 |
Q |
| |
|
||||| |||| |||| | ||||||||||||||| ||||||||||||| || |||||||| ||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
36433764 |
tgaacccaaatctccaggcgattggtatgagagtggagatgggtcaggagggtgtgtaaggaagaacggttcatctgtttgtgggaatggagaagggttt |
36433863 |
T |
|
| Q |
271 |
atcaaa |
276 |
Q |
| |
|
|||||| |
|
|
| T |
36433864 |
atcaaa |
36433869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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