View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14598_low_9 (Length: 214)
Name: NF14598_low_9
Description: NF14598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14598_low_9 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5578 - 5791
Alignment:
| Q |
1 |
cttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccc |
100 |
Q |
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| T |
5578 |
cttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccc |
5677 |
T |
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| Q |
101 |
tccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcg |
200 |
Q |
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| T |
5678 |
tccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcg |
5777 |
T |
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| Q |
201 |
tcgaaagcctctcc |
214 |
Q |
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|||||||||||||| |
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| T |
5778 |
tcgaaagcctctcc |
5791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 9627 - 9774
Alignment:
| Q |
66 |
tacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttcc |
165 |
Q |
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||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
9627 |
tacgctgtcaaaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttcc |
9726 |
T |
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| Q |
166 |
atttccttcccatgaagttggcctccctgatggcgtcgaaagcctctc |
213 |
Q |
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| T |
9727 |
atttccttcccaagaagtaggcctccccgacggtgtagaaagtctctc |
9774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9578 - 9626
Alignment:
| Q |
1 |
cttcataccttacttagctcctggtcatatgatccctttatgtgacata |
49 |
Q |
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| T |
9578 |
cttcataccttacttatcacctggtcatatgatccctctatgcgacata |
9626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48911412 - 48911616
Alignment:
| Q |
1 |
cttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccc |
100 |
Q |
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| T |
48911412 |
cttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccc |
48911511 |
T |
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| Q |
101 |
tccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcg |
200 |
Q |
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| T |
48911512 |
tccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcg |
48911611 |
T |
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| Q |
201 |
tcgaa |
205 |
Q |
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||||| |
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| T |
48911612 |
tcgaa |
48911616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 48975190 - 48975033
Alignment:
| Q |
20 |
cctggtcatatgatccctttatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttg |
119 |
Q |
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||||| || |||| |||| |||| ||||| || ||||||||||||| | || |||| | ||||||||||| ||||| ||||| ||||| |||||| || |
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| T |
48975190 |
cctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatcattc |
48975091 |
T |
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| Q |
120 |
gcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttccca |
177 |
Q |
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| T |
48975090 |
tcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttccca |
48975033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 48952197 - 48952137
Alignment:
| Q |
153 |
ttcacaccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctc |
213 |
Q |
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|||| ||| ||| ||| |||||||| |||||||||||||| |||||| |||||| |||||| |
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| T |
48952197 |
ttcaaacctttcaattcccttcccaagaagttggcctccccgatggcatcgaaaacctctc |
48952137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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