View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14599_high_2 (Length: 302)

Name: NF14599_high_2
Description: NF14599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14599_high_2
NF14599_high_2
[»] chr2 (5 HSPs)
chr2 (18-149)||(24247463-24247595)
chr2 (19-149)||(3643438-3643569)
chr2 (18-152)||(24267515-24267649)
chr2 (155-298)||(45074128-45074267)
chr2 (18-152)||(27511016-27511151)
[»] scaffold0262 (1 HSPs)
scaffold0262 (18-152)||(20644-20779)
[»] scaffold0134 (1 HSPs)
scaffold0134 (18-152)||(4112-4247)
[»] chr7 (4 HSPs)
chr7 (18-152)||(42233631-42233766)
chr7 (19-152)||(22845426-22845560)
chr7 (18-152)||(21068507-21068642)
chr7 (18-152)||(7039091-7039226)
[»] chr6 (5 HSPs)
chr6 (18-152)||(15334936-15335071)
chr6 (155-294)||(27366779-27366914)
chr6 (155-294)||(27457126-27457261)
chr6 (19-152)||(30882948-30883082)
chr6 (18-152)||(18858178-18858313)
[»] chr4 (2 HSPs)
chr4 (18-152)||(55557568-55557703)
chr4 (18-149)||(14146006-14146138)
[»] scaffold0356 (1 HSPs)
scaffold0356 (19-152)||(16410-16544)
[»] chr5 (8 HSPs)
chr5 (155-289)||(22631548-22631682)
chr5 (18-152)||(3691580-3691715)
chr5 (18-152)||(3875072-3875207)
chr5 (18-152)||(10026619-10026754)
chr5 (18-148)||(25541241-25541372)
chr5 (19-152)||(30349998-30350132)
chr5 (18-152)||(24628406-24628541)
chr5 (18-128)||(30345141-30345252)
[»] chr1 (5 HSPs)
chr1 (18-152)||(36208857-36208992)
chr1 (18-152)||(36521352-36521487)
chr1 (18-152)||(52502211-52502346)
chr1 (31-152)||(6308704-6308826)
chr1 (210-288)||(51094236-51094314)
[»] scaffold0002 (2 HSPs)
scaffold0002 (19-152)||(319843-319977)
scaffold0002 (18-151)||(318177-318310)
[»] chr3 (6 HSPs)
chr3 (18-151)||(10002048-10002182)
chr3 (19-152)||(10112241-10112375)
chr3 (18-152)||(11370279-11370413)
chr3 (18-152)||(10245925-10246058)
chr3 (22-107)||(15326896-15326982)
chr3 (20-119)||(10041973-10042073)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-152)||(184415-184550)
[»] chr8 (4 HSPs)
chr8 (186-289)||(23120876-23120979)
chr8 (18-152)||(21112189-21112323)
chr8 (22-152)||(14772067-14772198)
chr8 (22-152)||(14769363-14769494)
[»] scaffold0029 (1 HSPs)
scaffold0029 (18-151)||(140710-140843)
[»] scaffold0118 (2 HSPs)
scaffold0118 (18-152)||(27163-27298)
scaffold0118 (18-152)||(23969-24104)
[»] scaffold0225 (1 HSPs)
scaffold0225 (51-152)||(12739-12840)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-148)||(188184-188308)
[»] scaffold0073 (1 HSPs)
scaffold0073 (18-152)||(15374-15509)
[»] scaffold0196 (1 HSPs)
scaffold0196 (18-148)||(24379-24511)
[»] scaffold0179 (1 HSPs)
scaffold0179 (204-298)||(28029-28123)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 24247463 - 24247595
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||||||||||| ||||||    
T  24247463 ctatgtagtttcacacaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtatcccaatcat 24247562  T
Q  117 ggcctctcatctccgctcttctcttaaccctta 149  Q
    ||||| |||||||||||||| ||||||||||||    
T  24247563 ggcctatcatctccgctcttatcttaaccctta 24247595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 3643438 - 3643569
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  |||||||||| |||  ||||||     
T  3643438 tatgtagcttcacacaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgcatctcaatcatt 3643537  T
Q  118 gcctctcatctccgctcttctcttaaccctta 149  Q
     |||||||||||||||||| ||||||||||||    
T  3643538 tcctctcatctccgctcttatcttaaccctta 3643569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 24267649 - 24267515
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||||| |||||||| ||||| ||| | ||||||| ||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  24267649 ctatgtagcttcacacagccttccttcaaaatcttttgcaggaaaa-actttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 24267551  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  24267550 ggcctctcatctccgctcttatcttaacccttacat 24267515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 298
Target Start/End: Original strand, 45074128 - 45074267
Alignment:
Q  155 ggatggaccatataactctttctcttggttcttgaagcttatttatttgataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacatt 254  Q
    ||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||||||    | |||||||||||||||||||||||||||    
T  45074128 ggatggaccatataactctttctcttggttccttaagcttcttgatttgataattttcaatgcaatg----cttagagaaaccttttgatgcatgacatt 45074223  T
Q  255 ggatgtaggtacttcttttgcaggtggtctcaaatcttgacgtc 298  Q
    |||   || ||||| ||||||| ||||| | |||||||||||||    
T  45074224 ggaaacagatacttattttgcatgtggtttaaaatcttgacgtc 45074267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 27511016 - 27511151
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||| |||||||||||||| ||||| ||| || |||||||||||||||||| |||||||||||| ||||  ||||||||| ||||  ||||||    
T  27511016 ctatgtagcttaacacaaccttccttcaaaatcttttgttggaaaacactttggttttgatcctttaaatgtcaccacttgatccttttatcgcaatcat 27511115  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||| ||| || |||||| ||||||||    
T  27511116 ggcctctcatctctgcttttatcttaaaccttacat 27511151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 20644 - 20779
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  20644 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 20743  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  20744 ggcctctcatctccgctcttatcttaacccttacat 20779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 4247 - 4112
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | | ||||||||||||||||| |||||||||||| ||||  ||||||||||| ||||||||||    
T  4247 ctatgtagcttcacacaaccttccttcaaaatcttttgcaagaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcctaatcat 4148  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    | |||||||||||||||||| |||||||||||||||    
T  4147 gacctctcatctccgctcttatcttaacccttacat 4112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 42233631 - 42233766
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  42233631 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 42233730  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  42233731 ggcctctcatctccgctcttatcttaacccttacat 42233766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 22845426 - 22845560
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    |||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  |||||| |||||||  |||||||    
T  22845426 tatgtaacttcacacaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatctttgtatctcaatcatg 22845525  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||||||||| |||||||||||||||    
T  22845526 gcctctcatctccgctcttatcttaacccttacat 22845560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 21068642 - 21068507
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||| || ||||  ||||||||||| ||| ||||||    
T  21068642 ctatgtagcttcacacaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaattgtcaccacttgatccttgtttcccaatcat 21068543  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||| |||||| |||| |||| |||||| ||||||||    
T  21068542 ggcttctcatatccgttcttatcttaatccttacat 21068507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 7039091 - 7039226
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||| ||  ||||||||||||||||||| ||| ||| ||||||||| |  |||||||||||||||| |||||  ||||||||||||||| |||||     
T  7039091 ctatgtagttttgcacaaccttcctttaaaatcttttgtaagaaaacactatatttttcatcctttaaattccaccacttgatccttgtatcccaatcac 7039190  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    | | ||||||||  | ||||||||||||||||||||    
T  7039191 gacatctcatctttggtcttctcttaacccttacat 7039226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15334936 - 15335071
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||| || |||||||||||| ||||  ||||||||||| ||| ||||||    
T  15334936 ctatgcagcttcacacaaccttccttcaaaatcttttgtaggaaaacactttggtcttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 15335035  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  15335036 ggcctctcatctccgctcttatcttaacccttacat 15335071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 27366914 - 27366779
Alignment:
Q  155 ggatggaccatataactctttctcttggttcttgaagcttatttatttgataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacatt 254  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||    | |||||||||||||||||||||||||||    
T  27366914 ggatggaccatataactctttctcttggttctttaagcttcttgatttgataattttcaatgcaatg----cttagagaaaccttttgatgcatgacatt 27366819  T
Q  255 ggatgtaggtacttcttttgcaggtggtctcaaatcttga 294  Q
    |||   |||||||| ||||||| || |||| |||||||||    
T  27366818 ggaaacaggtacttattttgcatgtagtctaaaatcttga 27366779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 27457261 - 27457126
Alignment:
Q  155 ggatggaccatataactctttctcttggttcttgaagcttatttatttgataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacatt 254  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||    | |||||||||||||||||||||||||||    
T  27457261 ggatggaccatataactctttctcttggttctttaagcttcttgatttgataattttcaatgcaatg----cttagagaaaccttttgatgcatgacatt 27457166  T
Q  255 ggatgtaggtacttcttttgcaggtggtctcaaatcttga 294  Q
    |||   |||||||| ||||||| || |||| |||||||||    
T  27457165 ggaaacaggtacttattttgcatgtagtctaaaatcttga 27457126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 30882948 - 30883082
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    |||||| |||||||||| ||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  |||||| |||||||  |||||||    
T  30882948 tatgtaacttcacacaatcttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatctttgtatctcaatcatg 30883047  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||||||||| |||||||||||||||    
T  30883048 gcctctcatctccgctcttatcttaacccttacat 30883082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 18858178 - 18858313
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||| ||| |||||||||| ||| | ||| ||||||||||||||||||||| |||||||||||  ||||  ||||||||||||||  ||||||    
T  18858178 ctatgtagcttaacataaccttccttcaaatttttttgtaggaaaacactttggttttgatcctttaaatctcaccacttgatccttgtatcacaatcat 18858277  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  18858278 ggcctctcatctccgctcttatcttaacccttacat 18858313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 55557703 - 55557568
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  55557703 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 55557604  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  55557603 ggcctctcatctccgctcttatcttaacccttacat 55557568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 14146138 - 14146006
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||||||||| | || |||    
T  14146138 ctatgtagcttcacacaaccttccttcaaatttttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtatgccaaccat 14146039  T
Q  117 ggcctctcatctccgctcttctcttaaccctta 149  Q
    |||||||||||||||||||| ||||||||||||    
T  14146038 ggcctctcatctccgctcttatcttaaccctta 14146006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 16544 - 16410
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    |||||||||||||||||||||| || ||||| ||| |||| |||||||||||||||| |||||||||||| ||||  ||||||||||||||  |||||||    
T  16544 tatgtagcttcacacaaccttctttcaaaatcttttgtagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtatctcaatcatg 16445  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||||||||| |||||||||||||||    
T  16444 gcctctcatctccgctcttatcttaacccttacat 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 22631682 - 22631548
Alignment:
Q  155 ggatggaccatataactctttctcttggttcttgaagcttatttatttgataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacatt 254  Q
    ||||||| ||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  22631682 ggatggagcatataactctttttgtttgttcttgaagcttctttatttgataattttcaatgcaatgctttcctagagaaaccttttgatgcatgacgtt 22631583  T
Q  255 ggatgtaggtacttcttttgcaggtggtctcaaat 289  Q
    |||   ||||||| |||||| | ||||||||||||    
T  22631582 ggaatcaggtactgcttttgtaagtggtctcaaat 22631548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 3691580 - 3691715
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| |||| |    
T  3691580 ctatgtagcttcacaaaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccatgtatcccaatcgt 3691679  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||| |||||| |||||||| ||||||    
T  3691680 ggcctctcatctctgctcttatcttaacctttacat 3691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 3875207 - 3875072
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| |||| |    
T  3875207 ctatgtagcttcacaaaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccatgtatcccaatcgt 3875108  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||| |||||| |||||||| ||||||    
T  3875107 ggcctctcatctctgctcttatcttaacctttacat 3875072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 10026619 - 10026754
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  10026619 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 10026718  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  10026719 ggcctctcatctccactcttatcttaatccttacat 10026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 25541372 - 25541241
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||| ||| |||||||| ||||  ||||||||||| ||| ||||||    
T  25541372 ctatgtagcttcacacaaccttccttcaaaatcttttgtaggaaaacattttggttttgatcttttaaatgtcaccacttgatccttgtttcccaatcat 25541273  T
Q  117 ggcctctcatctccgctcttctcttaaccctt 148  Q
    |||||||||||||||||||| | |||||||||    
T  25541272 ggcctctcatctccgctcttatattaaccctt 25541241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 30350132 - 30349998
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||  ||||| |||| |||  ||||||     
T  30350132 tatgtaacttcacacaaccttccttcaaaatattttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgattcttgcatctcaatcatt 30350033  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
     |||||||||||||||||| |||||||||||||||    
T  30350032 tcctctcatctccgctcttatcttaacccttacat 30349998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 24628541 - 24628406
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  |||||| |||| ||| ||||||    
T  24628541 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatcattgtttcccaatcat 24628442  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||| |||||||| ||||||| |||||||||||||||    
T  24628441 ggcttctcatcttcgctcttatcttaacccttacat 24628406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 30345252 - 30345141
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  30345252 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 30345153  T
Q  117 ggcctctcatct 128  Q
    ||| ||||||||    
T  30345152 ggcttctcatct 30345141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 36208857 - 36208992
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| |||| |||||||||||| ||| |||||||||||| || |  ||||||||||||||| ||||||    
T  36208857 ctatgtagcttcacacaaccttccttcaaaatcttttgtagaaaaacactttggctttgatcctttaaatgtcatcacttgatccttgtatcccaatcat 36208956  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||| |||||||| |||||||||||||||    
T  36208957 ggcctctcatccccgctcttatcttaacccttacat 36208992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 36521352 - 36521487
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||| ||||||||| |||||||||||| ||||  ||||||||||| | | ||||||    
T  36521352 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacagtttggttttgatcctttaaatgtcaccacttgatccttgttttccaatcat 36521451  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| |||||||||||||||    
T  36521452 ggcctctcatctccgctcttatcttaacccttacat 36521487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 52502211 - 52502346
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  |||||| |||| ||| ||||||    
T  52502211 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatcattgtttcccaatcat 52502310  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||| |||||||| ||||||| |||||||||||||||    
T  52502311 ggcttctcatcttcgctcttatcttaacccttacat 52502346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 6308826 - 6308704
Alignment:
Q  31 cacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatggcctctcatctc 129  Q
    ||||||||||||||||||| ||| ||| ||||||||| |  |||||||||||||||  |||||  ||||||||||||||| ||||||| | ||||||||     
T  6308826 cacaaccttcctttaaaatcttttgtaagaaaacactatatttttcatcctttaaactccaccacttgatccttgtatcccaatcatgacatctcatctt 6308727  T
Q  130 cgctcttctcttaacccttacat 152  Q
     | ||||||||||||||||||||    
T  6308726 tggtcttctcttaacccttacat 6308704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 51094314 - 51094236
Alignment:
Q  210 ttcaatgcaatgcattcctagagaaaccttttgatgcatgacattggatgtaggtacttcttttgcaggtggtctcaaa 288  Q
    |||||||  |||| ||| |||||||||||||||  ||||||| || |||  |||||||||||||||| |||||||||||    
T  51094314 ttcaatgttatgctttcgtagagaaaccttttgtagcatgacgttagatagaggtacttcttttgcaagtggtctcaaa 51094236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 319977 - 319843
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| || |||||||||||| ||||  ||||||||||||||  ||||||     
T  319977 tatgtagcttcacacaaccttccttcaaaatcttttgtaggaaaacactttggtcttgatcctttaaatgtcaccacttgatccttgtatctcaatcatt 319878  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
     |||||||||||||||||| |||||||||||||||    
T  319877 tcctctcatctccgctcttatcttaacccttacat 319843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 318310 - 318177
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  318310 ctatgtagcttcac-caaccttccttcaaaatattttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 318212  T
Q  117 ggcctctcatctccgctcttctcttaacccttaca 151  Q
    | |||||||| ||||||||| ||||||||||||||    
T  318211 gacctctcatatccgctcttatcttaacccttaca 318177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 10002048 - 10002182
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||  ||||||    
T  10002048 ctatgtagcttcacacaaccttccttcaaaatcttttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttctcaatcat 10002147  T
Q  117 ggcctctcatctccgctcttctcttaacccttaca 151  Q
    |||||||||||| ||||||| ||||||||||||||    
T  10002148 ggcctctcatcttcgctcttatcttaacccttaca 10002182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 10112241 - 10112375
Alignment:
Q  19 tatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    ||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||  |||||||    
T  10112241 tatgtagcttcacacaaccttccttcaaaatcttttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttctcaatcatg 10112340  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||| ||||||| |||||||||||||||    
T  10112341 gcctctcatcttcgctcttatcttaacccttacat 10112375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 11370279 - 11370413
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||||||||| | |||| |    
T  11370279 ctatgtagcttcacagaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccagttgatccttgtataccaatcgt 11370378  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
     |||||||||||| |||||| |||||||||||||||    
T  11370379 -gcctctcatctctgctcttatcttaacccttacat 11370413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 10245925 - 10246058
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatatttgtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatg 117  Q
    |||||||||||||||||||||||||| |||   |||| ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||  |||||||    
T  10245925 ctatgtagcttcacacaaccttccttcaaatcttttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttctcaatcatg 10246024  T
Q  118 gcctctcatctccgctcttctcttaacccttacat 152  Q
    |||| |||||| ||||||| |||||||||||||||    
T  10246025 gcct-tcatcttcgctcttatcttaacccttacat 10246058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 15326982 - 15326896
Alignment:
Q  22 gtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtat 107  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||| ||  |||||| ||||||    
T  15326982 gtagcttcacacaaccttcctttaaaatcttttgtagaaaaacactatgtttttcatcctttaaatgcccccacttgatcattgtat 15326896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 10041973 - 10042073
Alignment:
Q  20 atgtagcttcacacaaccttcctttaaaatatt-tgtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatgg 118  Q
    |||||||||| || |||||| ||||||||| || |||  ||| | |||||| |||||| | ||||| |||||||  |||||||||| | |||||||||||    
T  10041973 atgtagcttcgcaaaaccttgctttaaaatcttatgtttgaagagactttgtttttcaccttttaagtgccaccacttgatccttggagcctaatcatgg 10042072  T
Q  119 c 119  Q
    |    
T  10042073 c 10042073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 184415 - 184550
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| |||| |    
T  184415 ctatgtagcttcacaaaaccttccttcaaaatcttttgtaggaaaacactttggttttgatcctttaaatgtcaccacttgatccatgtatcccaatcgt 184514  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||||||||||||| |||||| |||||||| ||||||    
T  184515 ggcctctcatctctgctcttatcttaacctttacat 184550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 23120876 - 23120979
Alignment:
Q  186 ttgaagcttatttatttgataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacattggatgtaggtacttcttttgcaggtggtctc 285  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||   |||||||||||||||| ||||||||    
T  23120876 ttgaagcttctttatttgataattttcaatgcaatgctttcctagagaaaccttttgatgcatgacgttggaatcaggtacttcttttgcaagtggtctc 23120975  T
Q  286 aaat 289  Q
    ||||    
T  23120976 aaat 23120979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 21112323 - 21112189
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    ||||||||||||||||| |||||||| ||||| ||| | ||||||| ||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  21112323 ctatgtagcttcacacagccttccttcaaaatcttttgcaggaaaa-actttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 21112225  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
     ||||||||||||||||||| |||||||||||||||    
T  21112224 agcctctcatctccgctcttatcttaacccttacat 21112189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 14772067 - 14772198
Alignment:
Q  22 gtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatggcc 120  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||| ||  |||||| |||||| | ||   ||||     
T  14772067 gtagcttcacacaaccttcctttaaaatcttttgtagaaaaacactatgtttttcatcctttaaatgcccccacttgatcattgtataccaactgtggca 14772166  T
Q  121 tctcatctccgctcttctcttaacccttacat 152  Q
    |||| ||  ||||||||||||||  |||||||    
T  14772167 tctcctcatcgctcttctcttaatacttacat 14772198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 14769363 - 14769494
Alignment:
Q  22 gtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatggcc 120  Q
    |||||||| ||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||| ||  |||||| |||||| | ||   ||||     
T  14769363 gtagcttcgcacaaccttcctttaaaatcttttgtagaaaaacactatgtttttcatcctttaaatgcccccacttgatcattgtataccaactgtggca 14769462  T
Q  121 tctcatctccgctcttctcttaacccttacat 152  Q
    |||| ||  ||||||||||||||  |||||||    
T  14769463 tctcctcatcgctcttctcttaatacttacat 14769494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 140843 - 140710
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||| ||||||    
T  140843 ctatgtagcttcac-caaccttccttcaaaatattttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcat 140745  T
Q  117 ggcctctcatctccgctcttctcttaacccttaca 151  Q
    | |||||||| ||||||||| ||||||||||||||    
T  140744 gacctctcatatccgctcttatcttaacccttaca 140710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 27298 - 27163
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| ||| | || |||||||||||||||| |||||||||||| ||||  |||||| |||| ||| ||||||    
T  27298 ctatgtagcttcacacaaccttccttcaaaatcttttgcagaaaaacactttggttttgatcctttaaatgtcaccacttgatcattgtttcccaatcat 27199  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    ||| |||||||| ||||||| |||||||||||||||    
T  27198 ggcttctcatcttcgctcttatcttaacccttacat 27163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 24104 - 23969
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatatttgt-aggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||||| ||||| |||   || ||||||||||| |||| |||||||||||| ||||  ||||||||||| | | ||||||    
T  24104 ctatgtagcttcacacaaccttccttcaaaatcttttacagaaaaacactttgtttttgatcctttaaatgtcaccacttgatccttgttttccaatcat 24005  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    |||||||||||||||||||| ||||||| |||||||    
T  24004 ggcctctcatctccgctcttatcttaactcttacat 23969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 12840 - 12739
Alignment:
Q  51 tttgtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcatggcctctcatctccgctcttctcttaacccttac 150  Q
    |||| ||||||||||||||||||| |||||||||||| ||||  ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  12840 tttgcaggaaaacactttggttttgatcctttaaatgtcaccacttgatccttgtttcccaatcatggcctctcatctccgctcttatcttaacccttac 12741  T
Q  151 at 152  Q
    ||    
T  12740 at 12739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 188184 - 188308
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||||||||||||||||||| | ||||| ||| ||||||||||| ||||||||| |||||||||||| ||||  |||||||||||       ||||    
T  188184 ctatgtagcttcacacaaccttccatcaaaatcttttgtaggaaaacattttggttttgatcctttaaatgtcaccacttgatccttgt-------tcat 188276  T
Q  117 ggcctctcatctccgctcttctcttaaccctt 148  Q
    |||||||||||||||||||| |||||||||||    
T  188277 ggcctctcatctccgctcttatcttaaccctt 188308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15374 - 15509
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaatattt-gtaggaaaacactttggttttcatcctttaaatgccacccattgatccttgtatcctaatcat 116  Q
    |||||||| ||  ||||||||||||||||||| ||| ||| ||||||||| |  |||||||||||||||| |||||  ||||||||||||||| |||||     
T  15374 ctatgtagttttgcacaaccttcctttaaaatcttttgtaagaaaacactatatttttcatcctttaaattccaccacttgatccttgtatcccaatcac 15473  T
Q  117 ggcctctcatctccgctcttctcttaacccttacat 152  Q
    | | ||||||||  | ||||||||||||||||||||    
T  15474 gacatctcatctttggtcttctcttaacccttacat 15509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 24379 - 24511
Alignment:
Q  18 ctatgtagcttcacacaaccttcctttaaaata-tttgtaggaaaacactttg-gttttcatcctttaaatgccacccattgatccttgtatcctaatca 115  Q
    ||||||||||| || |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||||  ||||| ||||||||| ||       
T  24379 ctatgtagcttgacgcaaccttcctttaaaatattttgtagaaaaacactttgtgttttcatcctttaagtgtcaccatttgatgcttgtatcccaactg 24478  T
Q  116 tggcctctcatctccgctcttctcttaaccctt 148  Q
    |||  |||| ||| | |||||||||||||||||    
T  24479 tggtatctcctcttctctcttctcttaaccctt 24511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 28123 - 28029
Alignment:
Q  204 ataattttcaatgcaatgcattcctagagaaaccttttgatgcatgacattggatgtaggtacttcttttgcaggtggtctcaaatcttgacgtc 298  Q
    |||||||||||||  |||| ||| ||||||||||||||| || ||||| || |||  ||||| |||||||| |||||||||||||||||||||||    
T  28123 ataattttcaatgttatgctttcgtagagaaaccttttgttgtatgacgttagatagaggtatttcttttgtaggtggtctcaaatcttgacgtc 28029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University