View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14599_low_2 (Length: 303)
Name: NF14599_low_2
Description: NF14599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14599_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 43539498 - 43539736
Alignment:
| Q |
19 |
gttaacatgttctattaaagatagaccattgagaatgtgtttagggatgccagtttgaaggttgaatttgagcaaccaaaaagtacagatttttcaattc |
118 |
Q |
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| T |
43539498 |
gttaacatgttctattaaagatagaccattgagaatgtgtttagggatgccattttgaaggttgaatttgagcaaccaaaaagtacagatttttcaattc |
43539597 |
T |
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| Q |
119 |
tattgcctaatgttgtagtcttatatgagtaaaaaggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagagatgaagg |
218 |
Q |
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| T |
43539598 |
tattgcctaatgttgtagtcttatatgagtaaaaaggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagagatgaagg |
43539697 |
T |
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| Q |
219 |
tgataaatattctttatttggttttttatcattaataaa |
257 |
Q |
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| T |
43539698 |
tgataaatattctttttttggttttttatcattaataaa |
43539736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 54 - 260
Target Start/End: Original strand, 35676155 - 35676361
Alignment:
| Q |
54 |
tgtgtttagggatgccagttt-gaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcctaatgttgtagtcttatatgagtaaaa |
152 |
Q |
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| T |
35676155 |
tgtgtttagggatgccatttttgaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcttaatgctgtagtcttatatgagtaaaa |
35676254 |
T |
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| Q |
153 |
aggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagagatgaaggtgataaatattctttatttgg-ttttttatcatt |
251 |
Q |
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| T |
35676255 |
aggtaattctaactgaaaatttcaaaaagag--acaactttgaatttgcaaagatggagatgaagatggtgaatattatttttttggtttttttatcatt |
35676352 |
T |
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| Q |
252 |
aataaaaaa |
260 |
Q |
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||||||||| |
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| T |
35676353 |
aataaaaaa |
35676361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 59790 - 59737
Alignment:
| Q |
205 |
gatagagatgaaggtgataaatattctttatttggttttttatcattaataaaa |
258 |
Q |
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||||||||||||| |||| | |||||||| |||| ||||||||||||||||||| |
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| T |
59790 |
gatagagatgaagatgatgagtattctttttttgtttttttatcattaataaaa |
59737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 29979903 - 29979822
Alignment:
| Q |
131 |
ttgtagtcttatatgagtaaaaaggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagaga |
212 |
Q |
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| T |
29979903 |
ttgtagtcttatatgagtaaaaaggtaattctaattgaaaatttcaaaaagagagacaactttgaaattgcaaagatagaga |
29979822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 29979970 - 29979901
Alignment:
| Q |
19 |
gttaacatgttctattaaagatagaccattgagaatgtgtttagggatgccagtttgaaggttgaatttg |
88 |
Q |
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| T |
29979970 |
gttaacatattctattaaagatagaccattgagaatgtgtttagggatgccattttgaaggttgaatttg |
29979901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 8075721 - 8075666
Alignment:
| Q |
205 |
gatagagatgaaggtgataaatattctttatttggttttttatcattaataaaaaaa |
261 |
Q |
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| T |
8075721 |
gatagagatgaagatgatgcatattctttttttg-ttttttatcattaataaaaaaa |
8075666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 24381895 - 24381961
Alignment:
| Q |
114 |
aattctattgcctaatgttgtagtcttatatgagtaaaaaggta-attataattgaaaatttcaaaa |
179 |
Q |
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|||| |||||| |||||||||||||||||||||| |||| |||| ||| || ||||| ||||||||| |
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| T |
24381895 |
aattatattgcataatgttgtagtcttatatgaggaaaagggtacattctatttgaacatttcaaaa |
24381961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 8483692 - 8483637
Alignment:
| Q |
205 |
gatagagatgaaggtgataaatattctttatttggttttttatcattaataaaaaaa |
261 |
Q |
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| T |
8483692 |
gatagagatcaagatgatgaatattctttttttt-ttttttatcattaataaaaaaa |
8483637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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