View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14599_low_6 (Length: 235)
Name: NF14599_low_6
Description: NF14599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14599_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 34335901 - 34335677
Alignment:
| Q |
6 |
aaatgaagcttaaagactaaagaggaacaatgagattgaagaatgatcaaagagaaagaactatggtgacttatgttagcnnnnnnnnntcgacataaga |
105 |
Q |
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| T |
34335901 |
aaatgaagcttaaagactaaagaggaacaatgagattgaagaatgatcaaagagaaagaactatggtgacttatgttagcaaaaaaaaatcgacataaga |
34335802 |
T |
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| Q |
106 |
gttagcttttttgtaaatatgcttcaacgagacatttagaaagatggatacgacaaagattgtcgattaagaatggttgaagagccgcaatatgagttga |
205 |
Q |
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| T |
34335801 |
gttagcttttttgtaaatatgcttcaacgagacatttagaaagatggataagacaaagattgtcgattaagaatggttgaagagccgcaatatgagttga |
34335702 |
T |
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| Q |
206 |
agtgcactgaataaggatgcccttt |
230 |
Q |
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| T |
34335701 |
agtgcactgaataaggatgcccttt |
34335677 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 41559594 - 41559547
Alignment:
| Q |
19 |
agactaaagaggaacaatgagattgaagaatgatcaaagagaaagaac |
66 |
Q |
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|||||||||||||||| |||||| ||||||| ||| |||||||||||| |
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| T |
41559594 |
agactaaagaggaacagtgagatcgaagaatcatccaagagaaagaac |
41559547 |
T |
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