View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_101 (Length: 275)
Name: NF1459_high_101
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_101 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 45039388 - 45039123
Alignment:
| Q |
1 |
cttatcaatctacacagacattagatagtttttagttggtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatata |
100 |
Q |
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| T |
45039388 |
cttatcaatctacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatata |
45039289 |
T |
|
| Q |
101 |
atatattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45039288 |
atatattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctatttctctctgacattatgt |
45039189 |
T |
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| Q |
201 |
gatctagtgtatccgaagtgtttcgaggcttcttcgaatttgacccttgtttagctgttgatgatg |
266 |
Q |
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| T |
45039188 |
gatctagtgtatccgaagtgtttcgaggcttcttcgaattcgacccttggttagctgttgatgatg |
45039123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 45065022 - 45064773
Alignment:
| Q |
3 |
tatcaatctacacagacattagatagtttttagttggtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataat |
102 |
Q |
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| T |
45065022 |
tatcaatctacatagcctttagataatttttattgtatagcatctatccaatgataactactataaaaaa--ttactcattcatctaggtttaatataat |
45064925 |
T |
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| Q |
103 |
atattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtga |
202 |
Q |
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| T |
45064924 |
atgttatagactaaccttcttcaatcctggtataaagctcgaaagttatatgatcttacttgtaagaagttgtctcatattcctctctgacattatgtga |
45064825 |
T |
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| Q |
203 |
tctagtgtatccgaagtgtttcgaggcttcttcgaatttgacccttgtttag |
254 |
Q |
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| T |
45064824 |
cctactgtctcataagcgcttcgaggcttcttcgaatttgacccttgtttag |
45064773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 45083328 - 45083469
Alignment:
| Q |
105 |
attacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatc |
204 |
Q |
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|||||| |||||||||||||| ||||||||| || || ||||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
45083328 |
attacagactaaccttcttcagtccaggtataaatgctgaaagttctatgaactttcttgtaagttcacgtctcctgttcctctctgttattatgtgatc |
45083427 |
T |
|
| Q |
205 |
tagtgtatccgaagtgtttcgaggcttcttcgaatttgaccc |
246 |
Q |
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||| || || |||| | |||||| |||| | ||||| ||||| |
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| T |
45083428 |
tagcgtctcagaagcgcttcgagtcttccttgaattcgaccc |
45083469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 29376024 - 29375830
Alignment:
| Q |
53 |
atgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttcta |
152 |
Q |
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||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
29376024 |
atgataactactata--aaaatttactcatttgtcctggtttaatataatatattacaaactcaccttctttaatccaggtataaaggccgaaagttcta |
29375927 |
T |
|
| Q |
153 |
tgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggcttcttcgaatttgacccttg |
249 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| | ||| ||||||||| ||||| |||||||| |
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| T |
29375926 |
tgatcttccttgtaagtagctgtctcctattcctctctgacattatgtgatctagtgtctcagaagcgcttctaggcttctttgaattcgacccttg |
29375830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29377141 - 29377084
Alignment:
| Q |
1 |
cttatcaatctacacagacattagatagtttttagttggtagcttctatccaatgataac |
60 |
Q |
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|||||||||||||||| ||||||||| |||||| | |||||||||||||||| ||||| |
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| T |
29377141 |
cttatcaatctacacaaccattagataattttta--ttgtagcttctatccaattataac |
29377084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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